Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02961 ATGCTTAAAAATTTAAGAGTTCGTGCTACACATTCTAATCAAGAATTCAAAATTTCTGGCTTGAGTGAGAAACCCTGCATTCAACAACTTTTTAGTATGAAGATGAAAAATGGAGAAGACAGTAATGCGGAGCAGACAGTCGATGTTACTGTATACGAGTATTTTGCTAAACACCGTGGCATTGAGCTTACCTCTTCTGCTTACCTTCCATGTCTTGATGTTGGGAAGCCAAATCGGCCCATCTTCTTACCACTGGAGCTATGTTCACTTGTTCCCCTCCAGCGGTATACAAAGGCATTATCTCCTGTGCAAAGAGCATCTTTAGTAGAAAAATCACGCCAAAAGCCTCAAGAAGGAATCAAAATTCTGACAAATGCTATTAGACATTCTTGCTATGATGGTGATGCTGTTCTTGCGGCATGTGGCATTTCTATTGATAAACAATTCACTCCAGTTGAAGGTCGAGTTCTGGAGACACCAAAGTTGAAGGTCGGTAAGAATGAGGACTGCTTCCCTAATAATGGAAGGTGGAACTTTAAAAACAAGACACTTCTACAACCATCGCATATTGAATATTGGGCTGTTGTCAACTTTTCTGCACAATGTGATACTAGTTACATAACAAGGGAGCTGATCAAATGTGGAATGAGCAAGGGAATTAATATTGAACGGCCATATACTTTAATAGAGGAAGAAGCACAAATGAGGAAATCTAACCCGGTTGCAAGGGTTGAAAAGATGTTTGACCTGCTGACATCAAAACTTACTGGAGACCCAAAGTTGATTCTTTGTGTCTTGCCAGAGAGGAAAAACTGCGACATCTATGGGCCTTGGAAAAGGAAGTGCCTAAGTGAAGTTGGGGTTGTCACACAGTGTATTTCCCCTCTCAAGATCACTGATCAGTACCTTACTAACGTACTTCTTAAAATCAATTCTAAGCTTGGAGGAATAAATTCTTTGCTGGCAATTGAGCATTCTGGGCATCTTCCCTTGATTAAAGATGCCCCAACGATGATTTTAGGGATGGATGTCTCTCATGGTCCCCCTGGCCGATCGGATATTCCATCAATAGCAGCTGTTGTTGGATCTCGATGTTGGCCTCTAATTTCGAGGGAATTGCTTCTAGATTTCTATAGTTCAAGTAATGGACACAGACCAGCTCAAATTATTCTCTTCAGGGATGGAGTTAGTGAATCACAATTTCAACAGGTTTTAAATATAGAGCTTAACCAGATAATAAAGGCCTATAAATATCTTGGGAAGTTTGATGTTCCCAACTCTGGAAAATGTTCCTCCTGGGACAGTTGTCGACACAAAATTGTGCATCCAAGAAATTACGATTTCTACATGTGTACTCATGCGGGAATGCTTGGAACATCTAGGCCTGTACATTATCATGTGTTGCTTGATGAAATCGGATTCTCACCTGATGGCTTACAAAATTTGATCAATTCACTGTCTTATGTGAACCAAAGGAGCACCACTGCAACCTCAATTGTGGCGCCTATATCCTATGCCCACCATGCTGCAGCTCAAATGGGACAGTTTCTGAATTTTGATGACTTATCAGAAGCATCTTTGAGTCCTGATTCAGAGGGAAACATCCCCATTCCCGAGCTTCCAAGGTTGCATAAAGATGTCAGGACCTCCATGTTCTTCTGTTGA 1665 0.4114 MLKNLRVRATHSNQEFKISGLSEKPCIQQLFSMKMKNGEDSNAEQTVDVTVYEYFAKHRGIELTSSAYLPCLDVGKPNRPIFLPLELCSLVPLQRYTKALSPVQRASLVEKSRQKPQEGIKILTNAIRHSCYDGDAVLAACGISIDKQFTPVEGRVLETPKLKVGKNEDCFPNNGRWNFKNKTLLQPSHIEYWAVVNFSAQCDTSYITRELIKCGMSKGINIERPYTLIEEEAQMRKSNPVARVEKMFDLLTSKLTGDPKLILCVLPERKNCDIYGPWKRKCLSEVGVVTQCISPLKITDQYLTNVLLKINSKLGGINSLLAIEHSGHLPLIKDAPTMILGMDVSHGPPGRSDIPSIAAVVGSRCWPLISRELLLDFYSSSNGHRPAQIILFRDGVSESQFQQVLNIELNQIIKAYKYLGKFDVPNSGKCSSWDSCRHKIVHPRNYDFYMCTHAGMLGTSRPVHYHVLLDEIGFSPDGLQNLINSLSYVNQRSTTATSIVAPISYAHHAAAQMGQFLNFDDLSEASLSPDSEGNIPIPELPRLHKDVRTSMFFC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02961 554 Gene3D paz domain 1 95 - -
Trre6g02961 554 Pfam Mid domain of argonaute 172 224 IPR032473 -
Trre6g02961 554 CDD PAZ_argonaute_like 1 91 - -
Trre6g02961 554 Gene3D - 156 322 - -
Trre6g02961 554 ProSiteProfiles Piwi domain profile. 261 518 IPR003165 GO:0003676
Trre6g02961 554 Pfam Piwi domain 371 421 IPR003165 GO:0003676
Trre6g02961 554 Pfam Piwi domain 438 517 IPR003165 GO:0003676
Trre6g02961 554 Pfam Piwi domain 261 365 IPR003165 GO:0003676
Trre6g02961 554 SMART Piwi_a_2 261 518 IPR003165 GO:0003676
Trre6g02961 554 Pfam Argonaute linker 2 domain 122 163 IPR032472 -
Trre6g02961 554 Gene3D - 328 425 IPR036397 GO:0003676
Trre6g02961 554 Gene3D - 426 554 IPR036397 GO:0003676
Trre6g02961 554 ProSiteProfiles PAZ domain profile. 2 92 IPR003100 GO:0005515
Trre6g02961 554 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 2 520 - -
Trre6g02961 554 SUPERFAMILY Ribonuclease H-like 245 518 IPR012337 -
Trre6g02961 554 SUPERFAMILY PAZ domain 1 130 IPR036085 GO:0005515
Trre6g02961 554 Pfam PAZ domain 2 108 IPR003100 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02961 Trre-Chr6 26773739 26778857 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02961 2 554 Eukaryotic Initiation Factors Gene Family AT5G43810 32.441 2.25e-94 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02961 K11593 - gmx:100778875 872.848