Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02948 ATGGGATCTTTCAATCAAAGTGTGAGCATAGGTGACTCACTCATCGCTGATAATAATGGGACAACTCAATGGTTCTCTCCTTCAAGAGAATTTGCATTTGGGTTTTACCAACTTCCAAACAAGCTTTTCTTACTAGCTATATGGTATGCCAAGATACAGAATGATTCCATCATTTGGTATGCAAATGGAGACAACCCTGCTCCTAAAGGATCAAGATTGGTATTAAATGATTCTCATGGATTGGTGCTCACCAGCCCTAAAGGCTCAGAGCTATGGAGATCATCAGAGTTTACTTCAAGTAGAATTTCAAGAGGTCTAATGAAGGATGATGGAAATTTTCAATTACGAGACAAAAATTCTGTTGTTTTATGGCAGAGTTTCGATAATTTTACCGACACATTAGTTCCTGGTCAAACATTGAATTTAAATAACTATCTTTATTCTCGACAAGGAGAATTCAACTTTTCACGTGGAAGGTTTGAACTTTGCCTACAAGATAATGGGGATGTTATCCTCCTTGATCTTATAAATTTTCCAACAAAAAAAAACTGTAGTGCTAAACAAGATACTTACTACGATAGTGGAATTGTTGATAGTTATAATCAATCACCTAATGTTGGCCAAAGATTTATGTTTGACAGGTTAGAATTCTTTTTATACATATTGAAACATAATGGGGAAAAGTTTTCTCTCCTCAAAATTCCAGATACAGTTTCAAAGGATAAGTTCTACTATAAAGCAACGATGAATTATGATGGAGTTTTTACCCTCTCATATCATCCTAAAGATCTAAAAAATGGTCAAAATTGGATAGTTGCAAAGACTTCATCAATACCTGAGAACATTTGTTTGAATTCTACATCTACCAATGGTCAAGGTATTTGTGGGTTCAATAGCATTTGCAGCCTTAGAGATGATCAAAGGCCAATGTGTTCCTGTGTAGAAGGATATTCTCTAATTGATTCAAACAACATGTATGGTGGTTGCGTATCAAATTTCCATGAAAATTGTCAAGGTAGGAATCGAAGTTCACAAAATGATACACACGGCCACGGAGGAGATATGATTGAATTGCCCAACACTTTTTGGCCTAAATTTGATTATGAACCATTGAGTCCTTGTAGTTTAGAAGAATGCAAGGATTATTGTAAGCAAGATTGCTCGTGTGTGTTGGTTTTTTTCAATGAAAGTTCTTGTTGGAAGAAGAAGCTACCACTTTCACATGGGAGAAAAGATCTAACAGCAAAAGGATTTTTTATCAAGAAAATGAAAAAAAATAATGATACTCTACAATCTCCCTCCTTTGTGATGAACGATGATCATGTTAAAAAGAAGAAAGATCACGATACTTTGATCATTGTGATATCCATTTTTTGGGGAATCTCCATTGTTATGATTTTTGTATTGATTGGTGTAATTTGTTTTTGGCACAAACACAAGAAGATTAGAAGTAGTGCAACCAAGAAGAGTGTTGTTGACAAAAACTTGAGAATTTTTACCTACAAGGAAATTACAGAAGCAACAAACAACTTTAGAGAAGAACTGGGAAGAGGGTCTTGTAGCATTGTATACAAAGGAATAATAGATGTGGATACTAGTGTGGCTGTTAAGAAATTGGACAAGTTGTTCCAAGATAGTGATAAAGAATTTCAGACTGAAATGAATGTGATAATCGAAACTCATCATAGAAACCTTGTTCGTTTTCATGGGTATTGTAGCGAGGGACAACACAGGATATTGGTGTATGAGTTAATGAGTAATGGTACTTTAGCAAGCTTCCTTTTCACCCATTTGAAACCAAGTTGGAGCCAAAGAGTTCGAATCGCAATTGGGATTGCAAAAGGTCTAGTTTACTTGCATGAGGAATGTTGCACCCAAATCATCCATTGTGACATAAAGCCACAAAACATACTTCTAGATGATGATTTTAATCCTAGGATTTCTGATTTTGGATTAGCAAAACTATTATTGATTGATCAAAGTCACACCAAAACTGGAATTAGAGGAACGAAAGGGTATGTTGCACCGGATTGGTTTAGGAGTGCACCGATCACTGCTAAGGTCGATGCTTATAGCTTTGGTGTGCTGTTACTAGAGATTATTTTCTGCAGGAAGAATGTTGAGGGTGATAATGTTAGTGAAGAAAAGAGGATTTTAATTGATTGGGCCTATGATTGCTACAAGGCTACAAAATTGGATCTTCTTCTACAAAATGAATGTGAGGCTATTGATGATATGAGTAGAGTGCAAAAATTTGTCATGATTGCTATTTGGTGCACTCAAGAAGATCCATCTCTTAGGCCAACAATGAAAAGGGTTTTGCTAATGCTAGAAGAGATTGTTGAAGTTGCTATTCCTCCAAGTCCCTACCTTTATGGTTCTTTTAGTTCAAAGTGA 2397 0.3571 MGSFNQSVSIGDSLIADNNGTTQWFSPSREFAFGFYQLPNKLFLLAIWYAKIQNDSIIWYANGDNPAPKGSRLVLNDSHGLVLTSPKGSELWRSSEFTSSRISRGLMKDDGNFQLRDKNSVVLWQSFDNFTDTLVPGQTLNLNNYLYSRQGEFNFSRGRFELCLQDNGDVILLDLINFPTKKNCSAKQDTYYDSGIVDSYNQSPNVGQRFMFDRLEFFLYILKHNGEKFSLLKIPDTVSKDKFYYKATMNYDGVFTLSYHPKDLKNGQNWIVAKTSSIPENICLNSTSTNGQGICGFNSICSLRDDQRPMCSCVEGYSLIDSNNMYGGCVSNFHENCQGRNRSSQNDTHGHGGDMIELPNTFWPKFDYEPLSPCSLEECKDYCKQDCSCVLVFFNESSCWKKKLPLSHGRKDLTAKGFFIKKMKKNNDTLQSPSFVMNDDHVKKKKDHDTLIIVISIFWGISIVMIFVLIGVICFWHKHKKIRSSATKKSVVDKNLRIFTYKEITEATNNFREELGRGSCSIVYKGIIDVDTSVAVKKLDKLFQDSDKEFQTEMNVIIETHHRNLVRFHGYCSEGQHRILVYELMSNGTLASFLFTHLKPSWSQRVRIAIGIAKGLVYLHEECCTQIIHCDIKPQNILLDDDFNPRISDFGLAKLLLIDQSHTKTGIRGTKGYVAPDWFRSAPITAKVDAYSFGVLLLEIIFCRKNVEGDNVSEEKRILIDWAYDCYKATKLDLLLQNECEAIDDMSRVQKFVMIAIWCTQEDPSLRPTMKRVLLMLEEIVEVAIPPSPYLYGSFSSK 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02948 798 Gene3D Transferase(Phosphotransferase) domain 1 585 785 - -
Trre6g02948 798 Pfam Protein kinase domain 512 774 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02948 798 CDD STKc_IRAK 515 780 - -
Trre6g02948 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 585 785 - -
Trre6g02948 798 Gene3D Phosphorylase Kinase; domain 1 472 584 - -
Trre6g02948 798 SMART serkin_6 509 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02948 798 Gene3D - 9 128 IPR036426 -
Trre6g02948 798 SUPERFAMILY Protein kinase-like (PK-like) 491 778 IPR011009 -
Trre6g02948 798 CDD B_lectin 26 130 IPR001480 -
Trre6g02948 798 SUPERFAMILY alpha-D-mannose-specific plant lectins 43 174 IPR036426 -
Trre6g02948 798 ProSitePatterns Serine/Threonine protein kinases active-site signature. 627 639 IPR008271 GO:0004672|GO:0006468
Trre6g02948 798 ProSiteProfiles Bulb-type lectin domain profile. 1 128 IPR001480 -
Trre6g02948 798 Gene3D - 130 292 - -
Trre6g02948 798 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase LECRK1 3 128 - -
Trre6g02948 798 Pfam D-mannose binding lectin 57 144 IPR001480 -
Trre6g02948 798 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD2-5 19 789 - -
Trre6g02948 798 PIRSF SRK 2 798 IPR024171 GO:0004674
Trre6g02948 798 ProSiteProfiles Protein kinase domain profile. 509 791 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02948 798 SMART blect_4 5 130 IPR001480 -
Trre6g02948 798 FunFam S-receptor-like serine/threonine-protein kinase 477 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02948 Trre-Chr6 26609698 26612094 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02948 495 778 Receptor kinase-like Gene Family AT1G60800 42.955 8.86e-70 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Trre6g02948 Pkinase 3.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02948 - - mtr:25487002 1048.5