Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02923 ATGGGTCGTTGCCGAACCGCTTCACGCTCCGCCGATGATGATGACCCCAACCACAGATCCAAGAGAAAAAGGGCTGCTTTAAATGCTGAGAATTTAGAAACTTCATCTGCAGGCATGGGAGTAACCGATGGCAAGGTATCACTATATCATTGTAATTACTGCAACAAAGATATTTCCGGGAAGATTCGCATCAAATGCGTTGTGTGTCAAGATTTTGATCTCTGCATAGAGTGCTTCTCTGTTGGTGCTGAGTTGACACCTCATAAAAGCAATCATCCATATCGGGTCATGGATAATCTATCTTTTCCACTTATATGTCCAGATTGGAGTGCAGATGAAGAGATGTTACTTCTTGAGGCCATTGACATGTATGGATTTGGAAATTGGAATGATGTTGCAGACAATGTTGGAACGAAAAGCAAATCTCAGTGTATTGAACACTATAACGCTGTATATCTGAATTCACCATGTTTTCCTCTACCTGATTTGTCTCTTGTGAAGGGAAAGAACAAAGAGGAACTTCTTGCCATGGCAAAGGGACATCAAGTCAAGAAAGAATTTCCTCCAAATGCAGAGCTGACTCTGAAAGAAGAAACTCTTTTTTCTGATGGAATAAACTCTGAAGAATCTAAGAAGGCAGAAACCACTGATCAAGCAATGTCCAGGCTAACCTCAGCATCCGGTAAAAAAGCTCTTTCAAGTACAACCAAGAAGGCTTCCAATGTGAGCCAGAATATTGATGGAGTTAAGGTGGAAGTAGAATCTCAAGCAGGTCGGAGCATTGGTGAAAAGAAACCTAAATTATCTGGGGAATATAATAAGCCTTCTATGAAAGCGTTGAGTGGGTACAATTCTAAGAGAGGTGAATTTGAAATTGAATATGACAATGATGCTGAGCAAGTTTTGGCAGAAATGGAATTTAAGGACACTGATACCGAAGCTGAACATGAAGCGAAATTGCAAGTGCTCCGTATCTATGGAAAAAGGTTAGATGAACGGAAGTACAGAAAAAAATTTATACTTGAAAGAAATTTACTTTCTCCTGATCCTTTTGAGAAATCTCTCTCACCTGAAGAGCTTGAAATATGTCAACGGTACAAGGTCTTCATGCGGTTTCACTCAAAAGAAGAGCATGAGGAGTTGCTAAAAACTATTATTGAAGAACACCGGCTTCTCAAAAGAATAAAAGACTTACAGGAAGCTCGGATTGCTGGCTGTGTAACTGCTGCTGATGCATATCAATTTGTTGAACAAAAGAGGGCAAATGAAGCTGAACAAGGTGACAATAAAGATAGTGGTCAGATTGGAACAAGTGGTAAGACTTCACAAAGGCCAAATTTCCCCAAAGTAGAGCTTGGTAGTAGCCCACGCGGGATCCATAAGGGCACTACAACATCATTTCCTGGTATCAAGGATGCACCGGTGGCCATACAAGCTATCACAAGGTCGCTAGAAGAATGGGATATCAGTGATTTTGACGGGGCTGAATTACTAACCGAATCAGAGATAAAGCTTTGTAATGAGATCAGATTACTACCGAGACACTACCTCCACATAAGTCAGACCATGCAATTAGAAATTTCAAAGGGCAATGTAACCAAGAAATCTGATGCATATCCATTGTTCAAGTTCTCTCCAAGCAAGATTGATAGAATTTATGACATGCTTGTGAAAAAAGGAGTTGTGCAACCTCAAGCATAA 1701 0.4045 MGRCRTASRSADDDDPNHRSKRKRAALNAENLETSSAGMGVTDGKVSLYHCNYCNKDISGKIRIKCVVCQDFDLCIECFSVGAELTPHKSNHPYRVMDNLSFPLICPDWSADEEMLLLEAIDMYGFGNWNDVADNVGTKSKSQCIEHYNAVYLNSPCFPLPDLSLVKGKNKEELLAMAKGHQVKKEFPPNAELTLKEETLFSDGINSEESKKAETTDQAMSRLTSASGKKALSSTTKKASNVSQNIDGVKVEVESQAGRSIGEKKPKLSGEYNKPSMKALSGYNSKRGEFEIEYDNDAEQVLAEMEFKDTDTEAEHEAKLQVLRIYGKRLDERKYRKKFILERNLLSPDPFEKSLSPEELEICQRYKVFMRFHSKEEHEELLKTIIEEHRLLKRIKDLQEARIAGCVTAADAYQFVEQKRANEAEQGDNKDSGQIGTSGKTSQRPNFPKVELGSSPRGIHKGTTTSFPGIKDAPVAIQAITRSLEEWDISDFDGAELLTESEIKLCNEIRLLPRHYLHISQTMQLEISKGNVTKKSDAYPLFKFSPSKIDRIYDMLVKKGVVQPQA 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02923 566 Pfam Myb-like DNA-binding domain 108 149 IPR001005 -
Trre6g02923 566 CDD SANT 109 149 IPR001005 -
Trre6g02923 566 MobiDBLite consensus disorder prediction 428 449 - -
Trre6g02923 566 SMART sant 105 154 IPR001005 -
Trre6g02923 566 MobiDBLite consensus disorder prediction 421 465 - -
Trre6g02923 566 PANTHER TRANSCRIPTIONAL ADAPTOR 2 ADA2 -RELATED 49 559 - -
Trre6g02923 566 ProSiteProfiles Myb-like domain profile. 109 152 IPR001005 -
Trre6g02923 566 MobiDBLite consensus disorder prediction 217 239 - -
Trre6g02923 566 SUPERFAMILY RING/U-box 49 112 - -
Trre6g02923 566 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 109 156 IPR017930 -
Trre6g02923 566 SUPERFAMILY Homeodomain-like 102 155 IPR009057 -
Trre6g02923 566 Gene3D - 478 563 IPR036388 -
Trre6g02923 566 ProSiteProfiles SWIRM domain profile. 478 566 IPR007526 GO:0005515
Trre6g02923 566 FunFam Transcriptional adapter 2 102 154 - -
Trre6g02923 566 ProSiteProfiles Zinc finger ZZ-type profile. 46 102 IPR000433 GO:0008270
Trre6g02923 566 Gene3D - 44 97 IPR043145 -
Trre6g02923 566 SUPERFAMILY Homeodomain-like 480 563 IPR009057 -
Trre6g02923 566 MobiDBLite consensus disorder prediction 204 239 - -
Trre6g02923 566 MobiDBLite consensus disorder prediction 1 27 - -
Trre6g02923 566 Gene3D - 103 154 - -
Trre6g02923 566 ProSiteProfiles SANT domain profile. 104 156 IPR017884 -
Trre6g02923 566 CDD ZZ_ADA2 49 97 IPR041983 -
Trre6g02923 566 Pfam Zinc finger, ZZ type 49 88 IPR000433 GO:0008270
Trre6g02923 566 ProSitePatterns Zinc finger ZZ-type signature. 51 78 IPR000433 GO:0008270
Trre6g02923 566 FunFam Transcriptional adapter 42 97 - -
Trre6g02923 566 PIRSF Txn_adaptor_ADA2 36 565 IPR016827 GO:0003713|GO:0006357|GO:0035065
Trre6g02923 566 SMART zz_5 45 89 IPR000433 GO:0008270
Trre6g02923 566 FunFam Transcriptional adapter 2 479 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02923 Trre-Chr6 26415543 26428877 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02923 1 561 EF-hand Containing Proteins AT3G07740 52.348 0.0 545
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Trre6g02923 Myb_DNA-binding 1.4e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02923 K11314 - gmx:100779424 835.099