Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02910 ATGGCACCATATGAAAGTTATAGTAGTCATGATCATGAGCATCCAACTCCCACAGATTTGTTGAAATTAAATGATGATGAATTAGTTGAAACACAACCCAATGTGTTCTATTTATGCTTGAATACGGAGATACATGAAGATGATATGGAATTTGAAGAAGAAGAAGAATGCATGGAAGAAATATATGGTGATGAATTTATAGAAGAATTTGGAATGGTTCCAGCTTCAAAGGATGCTATTGAGACAATGAAGACAAAATTGGATTTGAATGTTATGAAACATAGAGAAATATTATTTTGTACTATATGTATGGATGAGTTTGATCATATTAATAATGATGAGAGTATTATTGGCACATCAAACATAATTAACATGCCTTGTAATCATGTGTTTCACCAACAATGTATTGTCAAGTGGTTACAAACTAGTCATACATGTCCCTTGTGTCGATATCCAATGCCAACTACTCTCAATAGTTGA 480 0.3229 MAPYESYSSHDHEHPTPTDLLKLNDDELVETQPNVFYLCLNTEIHEDDMEFEEEEECMEEIYGDEFIEEFGMVPASKDAIETMKTKLDLNVMKHREILFCTICMDEFDHINNDESIIGTSNIINMPCNHVFHQQCIVKWLQTSHTCPLCRYPMPTTLNS 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02910 159 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 64 156 IPR013083 -
Trre6g02910 159 SMART ring_2 100 149 IPR001841 -
Trre6g02910 159 ProSiteProfiles Zinc finger RING-type profile. 100 150 IPR001841 -
Trre6g02910 159 MobiDBLite consensus disorder prediction 1 20 - -
Trre6g02910 159 Pfam Ring finger domain 100 150 IPR001841 -
Trre6g02910 159 SUPERFAMILY RING/U-box 99 156 - -
Trre6g02910 159 SMART ringv_2 99 150 IPR011016 GO:0008270
Trre6g02910 159 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 45 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02910 Trre-Chr6 26308864 26309583 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02910 71 154 C3H Transcription Factor Family AT1G18760 32.143 7.01e-12 59.3