Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02909 ATGAACATGGCACCATATGAAAGTTATAGTAGTCATGATCATGAGCATCCAACTCCCACAGATTTGTTGAAATTAAATGATGATGAATTAGTTGAAACACAACCCAATGTGTTCTATTTATGCTTGAATACGGAGATACATGAAGATGATATGGAATTTGAAGAAGAAGAAGAATGCATGGAAGAAATATATGGTGATGAATTTATAGAAGAATTTGGAATGGTTCCAGCTTCAAAGGATGCTATTGAGACAATGAAGACAAAATTGGATTTGAATGTTATGAAACATAGAGAAATATTATTTTGTACTATATGTATGGATGAGTTTGATCATATTAATAATGATGAGAGTATTATTGGCACATCAAACATAATTAACATGCCTTGTAATCATGTGTTTCACCAACAATGTATTGTCAAGTGGTTACAAACTAGTCATACATGTCCCTTGTGTCGATATCCAATGCCAACTACTCTCAATAGTTGA 486 0.323 MNMAPYESYSSHDHEHPTPTDLLKLNDDELVETQPNVFYLCLNTEIHEDDMEFEEEEECMEEIYGDEFIEEFGMVPASKDAIETMKTKLDLNVMKHREILFCTICMDEFDHINNDESIIGTSNIINMPCNHVFHQQCIVKWLQTSHTCPLCRYPMPTTLNS 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02909 161 MobiDBLite consensus disorder prediction 1 21 - -
Trre6g02909 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 158 IPR013083 -
Trre6g02909 161 Pfam Ring finger domain 102 152 IPR001841 -
Trre6g02909 161 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 47 156 - -
Trre6g02909 161 SMART ringv_2 101 152 IPR011016 GO:0008270
Trre6g02909 161 SUPERFAMILY RING/U-box 101 158 - -
Trre6g02909 161 SMART ring_2 102 151 IPR001841 -
Trre6g02909 161 ProSiteProfiles Zinc finger RING-type profile. 102 152 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02909 Trre-Chr6 26308858 26309583 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02909 73 156 C3H Transcription Factor Family AT1G18760 32.143 6.38e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02909 - - tpra:123904013 138.272