Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02907 ATGGCTCCATATGAAAGTTATAGTAGTCATGATCATGAGGATCCATCTCCCACAGATTTGTTGAAATTAAATGTCAATATTCATTGCTTGGCTAACTCAATTCACATAGGCTATGCATCCTTCAATCTTCCAACCATAGTCTTCAAGAAATTCTTCAGCCAAGAGGTTGAAACACAACCCAATGTGTTCTATTTATGCTTGAATACGGAGATACATGAAGATGATATTGGTGATGAAGATATGGAATTTGAAGAAGAAGAATGCATGGAAGAAATATATGGTGATGAATTTATAGAAGAATGTGGAATGGTTCCAGCTTCAAAGGATGCTATTGAGACAATGAAGACAAAATTGGATTTGAATGTTATGAAACATAGAGAAATAATATATTGTACTATATGTATGGATGAGTTTGATCATATTAATAATGATGAGAGTATTATTGGCACATCAAACATAATTAACATGCCTTGTAATCATGTGTTTCACCAACAATGTATTGTCAAGTGGTTACAAACTAGTCATACATGTCCCTTGTGTCGATATCCAATGCCAACTACTCTCAATAGTTGA 573 0.3368 MAPYESYSSHDHEDPSPTDLLKLNVNIHCLANSIHIGYASFNLPTIVFKKFFSQEVETQPNVFYLCLNTEIHEDDIGDEDMEFEEEECMEEIYGDEFIEECGMVPASKDAIETMKTKLDLNVMKHREIIYCTICMDEFDHINNDESIIGTSNIINMPCNHVFHQQCIVKWLQTSHTCPLCRYPMPTTLNS 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02907 190 SMART ring_2 131 180 IPR001841 -
Trre6g02907 190 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 190 IPR013083 -
Trre6g02907 190 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 72 185 - -
Trre6g02907 190 SUPERFAMILY RING/U-box 130 187 - -
Trre6g02907 190 ProSiteProfiles Zinc finger RING-type profile. 131 181 IPR001841 -
Trre6g02907 190 SMART ringv_2 130 181 IPR011016 GO:0008270
Trre6g02907 190 Pfam Ring finger domain 130 181 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02907 Trre-Chr6 26297273 26297989 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02907 102 185 C3H Transcription Factor Family AT1G18760 32.143 8.30e-12 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02907 - - tpra:123904013 197.208