Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02902 ATGGTTGAAGCTTCAGGAATGAGGATGATGTTCACCAACACAACCACTCTTATTCCTTCTTTTAACCCAACTATTCACAGAACAACAACCCATCTTTCTCTTTCTCAACTACCTCTCTCACGAAGAAACCACCATGTCTCTTTTGTTGTCTCTGCAACTCAAACCTCAACAACATCATTTATGGAAACTATTCCTTGGGGATGTGATAATGATTCACTTGATACTTCATCTTCTCTTCAGAAATGGCTTTCTGAGTCTGGTCTTCCTTCTCAGAAGATGGCCATTGATAAAGTTGATGTTGGAGAGAGAGGACTTGTTGCTTTGAACAATATTCGAAAAGGAGAGAAGCTTCTCTTTGTTCCTCCCTCTCTTGTCATCACTCCTGATTCTGAGTGGACCTGCCCGGAAGCTGGTGAAGTATTGAAAAAGAATTCAGTGCCGGATTGGCCATTGCTTGCAACTTACCTTATAAGTGAAGCTAGCCAAGTGAAATCTTCAAGATGGTTCAGTTATATATCGGCCTTACCTCGTCAACCCTACTCACTTCTTTACTGGTCACAAGCCGAACTAGATCGCTACTTGGAAGCTTCGCAGATTCGGGAGAGAGCAATTGAAAGGACCGACAATGTTATTGGAACATACAATGATATGAGGACCAGAATATTTTCCAAGTACCCTGATTTCTTCCCTGAAGAGGTGTTCAACATCGAGTCCTTCAAATGGTCATTTGGCATTCTTTTCTCGCGCATGGTTCGACTACCCTCGATGGATGGAAAGGTTGCCTTGGTTCCTTGGGCAGATATGCTGAATCATAGTTGTGAGGTGGAGACATTTTTGGATTATGATAAATCGACAAAGGGAATTGTCTTTACGACTGATCGTCCCTATCAACCAGGTGAGCAGGTTTTTATTTCTTATGGGAAAAAATCAAATGGGGAGCTTCTGTTATCATATGGATTTGTTCCAAAGGAGGGCACGAATCCAAGCGATTCAGTTGAGCTGTCACTGTCACTCGAGAAATCCGACGAGTCCTATAAGGAGAAGTTAGAACTGTTGAAGAAGTATGGATTATCGGGATCTCAGTGTTTTCCATTAAGGGTTACTGGTTGGCCATTGGAGTTAATGGCTTATGCTTATTTAGCTGTTAGCCCTTCAAGCATGAGAGGAAAATTTGAAGAGATGGCTGCCGCCGCATCAAATAAAACTACCTCGAAGAAGGACTTCAGATATCCTGAAATAGAGGAGCAAGCATTTCAATTCATACTAGATAGTTGTGAATCTAGTATCTCAAAATACAATAAGTTCTTACAGGTAAGTGGATCGCTAGATTTGGATGTGACTTCTCCGAAACAACTCAACCGAAGACTCTTTCTAAAGCAGCTAGCCGTGGATTTGTGTACTAGCGAACGTAGAATACTATATCGTGCTCAATATATACTGCGACGAAGACTGAGGGATATGAGGACCGGCGAATTAAAAGCCTTAACAATATTTAATGGGTTCCGGAAACTTTTCAAATGA 1521 0.4162 MVEASGMRMMFTNTTTLIPSFNPTIHRTTTHLSLSQLPLSRRNHHVSFVVSATQTSTTSFMETIPWGCDNDSLDTSSSLQKWLSESGLPSQKMAIDKVDVGERGLVALNNIRKGEKLLFVPPSLVITPDSEWTCPEAGEVLKKNSVPDWPLLATYLISEASQVKSSRWFSYISALPRQPYSLLYWSQAELDRYLEASQIRERAIERTDNVIGTYNDMRTRIFSKYPDFFPEEVFNIESFKWSFGILFSRMVRLPSMDGKVALVPWADMLNHSCEVETFLDYDKSTKGIVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSVELSLSLEKSDESYKEKLELLKKYGLSGSQCFPLRVTGWPLELMAYAYLAVSPSSMRGKFEEMAAAASNKTTSKKDFRYPEIEEQAFQFILDSCESSISKYNKFLQVSGSLDLDVTSPKQLNRRLFLKQLAVDLCTSERRILYRAQYILRRRLRDMRTGELKALTIFNGFRKLFK 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02902 506 Gene3D set domain protein methyltransferase, domain 1 38 320 - -
Trre6g02902 506 Pfam Rubisco LSMT substrate-binding 340 473 IPR015353 -
Trre6g02902 506 PIRSF RMT_SET 7 503 IPR011192 GO:0009507|GO:0030785
Trre6g02902 506 SUPERFAMILY SET domain 77 324 IPR046341 -
Trre6g02902 506 ProSiteProfiles SET domain profile. 91 307 IPR001214 GO:0005515
Trre6g02902 506 FunFam Rubisco methyltransferase family protein 326 489 - -
Trre6g02902 506 Pfam SET domain 103 307 IPR001214 GO:0005515
Trre6g02902 506 Gene3D - 326 491 IPR036464 -
Trre6g02902 506 SMART set_7 91 313 IPR001214 GO:0005515
Trre6g02902 506 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 58 320 - -
Trre6g02902 506 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 69 444 - -
Trre6g02902 506 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 337 504 IPR036464 -
Trre6g02902 506 CDD SET_RBCMT 86 321 IPR044431 GO:0016279|GO:0018022
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02902 Trre-Chr6 26259970 26263060 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02902 78 276 NAC Transcription Factor Family AT3G56570 22.549 1.26e-06 49.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre6g02902 SET 9.3e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02902 - - cam:101500121 840.876