Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02899 ATGGCTTCCAGAAAAGGCAACAATCCTCGCTCCGGCGACGGTGCTAGTCCAGGGAAAATCTTCATCGGAGGTTTAGCCAAAGACACAACCTTAGAGACATTCGTGAAGTATTTTGGTAGGTATGGCGAGATAACAGATTCCGTTATCATGAAAGATCGACATACGGGTCAACCCAGAGGATTCGGGTTCATCACTTATGCGGATCCTTCTGTTGTTGATCAAGTTATTATGGAGAATCACATAATCAATGATAAGCAGGTTGAAATCAAGAGGACTATTCCTAAGGGTTCATCGCAACAAAGTAATGATTTCAAAACAAAGAAGATTTTTGTCGGTGGCATTCCAGCAACAATATCCGATGATGAGCTCAAGAACTTCTTCTCTAAGCATGGGAATGTTGTGGAGCATGAGATAATACGTGACCACACCACTAAACGATCCCGTGGATTTGGTTTTGTAGTTTTTGATAATGATAAAGTTGTTGATAATTTGTTAGCTGACGGAAACATGATTGATATGGACGGTACTCAGGTTGAGATCAAGAAGGCTGAACCAAAGAAATCTTCAAATTCAGCTTCTTTTCCTTCATTTACTAGTGATTCTAGGGCACGTTCTTACAATGATGGTTTTGGTGGATTTGGCGATTCTTATGGAAGTTTTCCTGGTGGAGGTTATGACCCTTCATCTTATAGGTCACTCGGAGGTTACAGCAGTAGGCTTAGTGATTATGGTGGGTATGGAAGTGGAGATGACTTCAGTGGTGGTTTTGGGGGTTATGGTGGCAGTGGTGGTGCCGGTGGTTATGCGGGCTACAGAGGAGAATCTTCATTTGGCTATTCTGGCCGCTATGGCTCGTACATGGGGGCCCTTGGCGGTGGATACGGTGGTGGTGGGGTAGGCCCATACGGGAGAGGTGGTGGGGGCTATGAAAGTTATGGTGGTCCTGCCACTGGCGGAGGTTATGAATCTGGTGCTGGTTTTGGTGGGATAGGAGGACTCTATTCTAGCAGGGGAGGTTATGGGGGCAGTAATCGTTACCATCCTTACACACGATAG 1056 0.4545 MASRKGNNPRSGDGASPGKIFIGGLAKDTTLETFVKYFGRYGEITDSVIMKDRHTGQPRGFGFITYADPSVVDQVIMENHIINDKQVEIKRTIPKGSSQQSNDFKTKKIFVGGIPATISDDELKNFFSKHGNVVEHEIIRDHTTKRSRGFGFVVFDNDKVVDNLLADGNMIDMDGTQVEIKKAEPKKSSNSASFPSFTSDSRARSYNDGFGGFGDSYGSFPGGGYDPSSYRSLGGYSSRLSDYGGYGSGDDFSGGFGGYGGSGGAGGYAGYRGESSFGYSGRYGSYMGALGGGYGGGGVGPYGRGGGGYESYGGPATGGGYESGAGFGGIGGLYSSRGGYGGSNRYHPYTR 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02899 351 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 225 - -
Trre6g02899 351 Gene3D - 98 218 IPR012677 -
Trre6g02899 351 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Trre6g02899 351 Gene3D - 18 97 IPR012677 -
Trre6g02899 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Trre6g02899 351 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 5 351 - -
Trre6g02899 351 SMART rrm1_1 19 90 IPR000504 GO:0003723
Trre6g02899 351 SMART rrm1_1 108 181 IPR000504 GO:0003723
Trre6g02899 351 SUPERFAMILY RNA-binding domain, RBD 12 100 IPR035979 GO:0003676
Trre6g02899 351 SUPERFAMILY RNA-binding domain, RBD 98 191 IPR035979 GO:0003676
Trre6g02899 351 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 107 185 IPR000504 GO:0003723
Trre6g02899 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 109 167 IPR000504 GO:0003723
Trre6g02899 351 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 77 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02899 Trre-Chr6 26238463 26240691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02899 4 178 Eukaryotic Initiation Factors Gene Family AT1G71770 26.562 4.32e-16 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02899 K12741 - gmx:100801373 361.303