Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02895 ATGGGTTATATATGTGATTTTTGTGGAGACCAAAGGTCCATGGTGTACTGCCGATCCGATGCAGCATGTTTATGTTTGTCGTGTGATCGAAATGTTCATTCGGCGAATACACTTGCTCGAAGGCATTCAAGGACACTTTTATGTGAAAGATGCAGTTCACAACCAGCTTTGGTTAGGTGTTCTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTTAGGTCATGGTAGTAACTCTACATCTTCCAATCATAAGAGACAAACAATCAATTGTTACTCCGGTTGTCCTTCATCGTCCGAACTTTCTTCAATATGGTCTTTTGTGTTGGATATTCCTTCTCTGAGTGAAACCACGTGCGAGCAAGAACTAGGTTTCATGAGTATTAATGAGAATAGAAGTGCTTGGGTCGATCCGAAAAACCAGAATGTTTCTGATTCAGATAAAGTTACTGATTTACCTGCTGATTCGGATAAGTCTTTCGTCGGTACATCTTCAATGCCAGAATCAAGCAAAGAACCGCGTATGCTCGACCGCTCAGATGGACCTACCAATGAATGTGTACCAAAGTTATACTGTCCTGCTACAAAATGCCCTGAAGCAAGTGAAGATGATGATGATCTGTACGGCGATTTCGATATGGATGAAATGGATATAAATATTGAGAACTATGATGAACTTTTTGGCATGGCCCTTACTCATTCTGAAGAGCTTTTTGAAAATGGTGGATTTAACAGCTTATTTGGAGCAAAGGCCATGTCTGCTGGAGATTCCAATTGTCAAGATGCTATTGCAGCTGAGGGTTCATCAATTGGACATGTGAATGCAGCACAACCAGCATGCAGCACTGCAGCATCTGCAGATTCCATATTGAGTACTAAAACTGAACCGAATCTTTGTATTACGGCGAAGCAATCCCAGTCAAGCCTTTCTTTTTCTGGTATTAATGAAGACGGTGGTGCTGGAGACTATCAAGATTGTGGAGCTTCTTCAATGCTTCTCATGGGAGAACCTCCTTGGTTAAACACTTGTCCCGAAAATGAGCTACAACTACAATCTGCTAATCGCTGTAGTGCTGTTATGCGATACAAGGAAAAGAAGAAGACTCGCAAGTTCGACAAAAGAGTGAGATATGCCTCTCGCAAGGAAAGAGCTGATGTCCGAAGGCGCGTGAAAGGCCGGTTTGTCAAAGCTGGCGAGGCCTACGATTATGACCCTTTGAGCCAAACCAGAAGCTATTGA 1242 0.4235 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANTLARRHSRTLLCERCSSQPALVRCSEEKISLCQNCDWLGHGSNSTSSNHKRQTINCYSGCPSSSELSSIWSFVLDIPSLSETTCEQELGFMSINENRSAWVDPKNQNVSDSDKVTDLPADSDKSFVGTSSMPESSKEPRMLDRSDGPTNECVPKLYCPATKCPEASEDDDDLYGDFDMDEMDINIENYDELFGMALTHSEELFENGGFNSLFGAKAMSAGDSNCQDAIAAEGSSIGHVNAAQPACSTAASADSILSTKTEPNLCITAKQSQSSLSFSGINEDGGAGDYQDCGASSMLLMGEPPWLNTCPENELQLQSANRCSAVMRYKEKKKTRKFDKRVRYASRKERADVRRRVKGRFVKAGEAYDYDPLSQTRSY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02895 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre6g02895 413 Pfam CCT motif 356 398 IPR010402 GO:0005515
Trre6g02895 413 SMART bboxneu5 48 90 IPR000315 GO:0008270
Trre6g02895 413 SMART bboxneu5 4 47 IPR000315 GO:0008270
Trre6g02895 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Trre6g02895 413 CDD Bbox1_BBX-like 47 90 - -
Trre6g02895 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 401 - -
Trre6g02895 413 MobiDBLite consensus disorder prediction 138 182 - -
Trre6g02895 413 CDD Bbox1_BBX-like 4 47 - -
Trre6g02895 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02895 Trre-Chr6 26185533 26189254 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02895 1 413 C2C2-CO-like Transcription Factor Family AT3G07650 53.538 1.83e-145 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre6g02895 CCT 7.5e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02895 - - gmx:100796748 655.595