Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02894 ATGGGCCTATCAAGTCTTCCAGCACCATCTGAAGGAGTGTTATGCATAATTCTAGTAAACACTGCAATGTCAATATCAATATTCAAAGGCATTATTTGGACTATCTTACACATAATTGGTATAATTGCTTCACCATTATCCTCAACTTCAACTCCTTCACAAGATTACATCTCTCAAAACTCACCTGAGTCGTCATCATATGAATTCAATCTCAGTCCTTCAGATGATTTCATTGAAGAGTTCAGAAGCAGGACACCAACACTTAGGTTTGACACTGTGTGTAGTAGTAGCTGCTGCAAAGAACCTGAACATGATTGTTCAGTGTGTCTAACACAATTTGAACCTGAATCAGAGATAAACTACTGTTTATCTTGTGGACATGTTTTCCATAAAGTGTGTTTGGAAAAGTGGTTGGATTATTGGAACATTACATGTCCACTTTGTAGGACTCCTTTAATTCCTGAAGATGATGCAACTTGCTTATGA 486 0.3724 MGLSSLPAPSEGVLCIILVNTAMSISIFKGIIWTILHIIGIIASPLSSTSTPSQDYISQNSPESSSYEFNLSPSDDFIEEFRSRTPTLRFDTVCSSSCCKEPEHDCSVCLTQFEPESEINYCLSCGHVFHKVCLEKWLDYWNITCPLCRTPLIPEDDATCL 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02894 161 SUPERFAMILY RING/U-box 97 155 - -
Trre6g02894 161 ProSiteProfiles Zinc finger RING-type profile. 106 149 IPR001841 -
Trre6g02894 161 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 150 IPR013083 -
Trre6g02894 161 Pfam Ring finger domain 105 149 IPR001841 -
Trre6g02894 161 SMART ring_2 106 148 IPR001841 -
Trre6g02894 161 PANTHER - 1 156 IPR044249 -
Trre6g02894 161 SMART ringv_2 105 149 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02894 Trre-Chr6 26168966 26169451 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02894 1 156 C3H Transcription Factor Family AT2G04240 57.595 2.36e-54 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02894 K16285 - gmx:100786803 245.743