Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02886 ATGAGAAGGTTCACGTGGTTAACGCCGTACCGGCGCCATTTTCTTTCCTCCGTTGCATCAGAACGAGATTCGTTCCGAAAATTCTTCTCCTCTCATCAATCATTATTGCTTTCACGAAGTTTGTTTGGTTGCAATTTTGATACAAAAAGGGAGGAATATCTAATTCCGAGAATTCCATTCAGACATCGTTATGTTTACGCTTCAGCAGCATATTCTTCTTGCGCTGAACGAAACTATTATCAGATACTTGGTGTTTCTGAAAATGCTAGTCGGGATGAGATAAAGAAGGCATTTCATTTGCTTGCTAAAAAGTACCATCCAGATGCGAATAAGAATAATCCATCGGCAAAGAGGAAATTTCAAGATATAAGAGAAGCTTACGAGACATTGAGAGACCCTAAAAAGAGGGCAGAGTATAACAAGATACGTGCTCATGGTTCAGAGAACATGGAATATAGTAACAATTATGATGATGCAGAAAGATTTAAAAATGCATATCGTACTCATTTTTCTGATTCATTTCATAAAGTATTCTCTGAGATATTTGAAGAAGCAACAACTCAGTTCAAGTCAAATATAGAGGTGGAATTATCACTTACTTTCTCAGAAGCCGCTAGAGGATGCACCAAACATGTGTCATTTGATGCGTCAGTTCCCTGTGATAATTGCTATGGACAAGGATATCCACAAAATGCTACCCCAACAGTTTGTCCAACATGCAGGGGCTTAGGTCGAGTTACCATCCCTCCATTTACATCAACATGCATTACTTGTAAAGGATCTGGCCGCATCATTAAGGAGTTTTGTTTGTCATGTGGAGGATCTGGGGTTATTGAAGGGATTAAAGAAGTTAAAGTTACGATACCAGCAGGCGTGGATTCAGGAGATACAATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAGTGGTGGTCGACATGGAAGTTTATACATTAAAATAAAGGTGGTTGAGGATCCAGTCTTTGCGAGGGATGGTGCAGATATCTATGTGGAATCTAATATTAGCTTTACACAGGCGATTCTTGGTGGTGAAGTTGAAGTGCCTACCTTATCAGGGAAGATGCAAGTAAAGATACCTAAGGGTGTTCAACCAGGACAGCTGCTAGTATTTAGAGGCAAAGGACTGCCAAAACATGGGTATTTTGTACTCCATGGGGATCAGTATGTGCGCTTCCGTGTAAACTTTCCCATTGCAATCAATGAACGACAGCGTGCTATACTTGAAGAATTTGCAAAGGAAGAAATAACGCAGGGAAATAGTTCAATATCTGACGGAAATTGGTGGCAGCAAATTCTTGAATACACGACGGGTCCAAAGTTTATACTGGAACTATCTATGCTGATACTTTTCCTTGTCTTCATTAACAAAATGTTGAGCTGA 1401 0.4026 MRRFTWLTPYRRHFLSSVASERDSFRKFFSSHQSLLLSRSLFGCNFDTKREEYLIPRIPFRHRYVYASAAYSSCAERNYYQILGVSENASRDEIKKAFHLLAKKYHPDANKNNPSAKRKFQDIREAYETLRDPKKRAEYNKIRAHGSENMEYSNNYDDAERFKNAYRTHFSDSFHKVFSEIFEEATTQFKSNIEVELSLTFSEAARGCTKHVSFDASVPCDNCYGQGYPQNATPTVCPTCRGLGRVTIPPFTSTCITCKGSGRIIKEFCLSCGGSGVIEGIKEVKVTIPAGVDSGDTIHVPEGGNAAGSGGRHGSLYIKIKVVEDPVFARDGADIYVESNISFTQAILGGEVEVPTLSGKMQVKIPKGVQPGQLLVFRGKGLPKHGYFVLHGDQYVRFRVNFPIAINERQRAILEEFAKEEITQGNSSISDGNWWQQILEYTTGPKFILELSMLILFLVFINKMLS 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02886 466 ProSiteProfiles Zinc finger CR-type profile. 207 281 IPR001305 GO:0031072|GO:0051082
Trre6g02886 466 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 44 422 - -
Trre6g02886 466 PRINTS DnaJ domain signature 80 98 IPR001623 -
Trre6g02886 466 PRINTS DnaJ domain signature 98 113 IPR001623 -
Trre6g02886 466 PRINTS DnaJ domain signature 135 154 IPR001623 -
Trre6g02886 466 PRINTS DnaJ domain signature 115 135 IPR001623 -
Trre6g02886 466 ProSiteProfiles dnaJ domain profile. 78 143 IPR001623 -
Trre6g02886 466 Pfam DnaJ central domain 220 276 IPR001305 GO:0031072|GO:0051082
Trre6g02886 466 CDD DnaJ 78 132 IPR001623 -
Trre6g02886 466 SUPERFAMILY Chaperone J-domain 74 167 IPR036869 -
Trre6g02886 466 FunFam Chaperone protein dnaJ 1, mitochondrial 323 429 - -
Trre6g02886 466 CDD DnaJ_C 191 403 - -
Trre6g02886 466 Gene3D - 192 321 - -
Trre6g02886 466 SMART dnaj_3 77 135 IPR001623 -
Trre6g02886 466 Gene3D DnaJ domain 74 191 IPR036869 -
Trre6g02886 466 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 207 278 IPR036410 -
Trre6g02886 466 Pfam DnaJ domain 78 140 IPR001623 -
Trre6g02886 466 SUPERFAMILY HSP40/DnaJ peptide-binding domain 191 327 IPR008971 GO:0006457|GO:0051082
Trre6g02886 466 Hamap Chaperone protein DnaJ [dnaJ]. 75 441 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre6g02886 466 ProSitePatterns Nt-dnaJ domain signature. 120 139 IPR018253 -
Trre6g02886 466 Gene3D - 323 431 - -
Trre6g02886 466 Pfam DnaJ C terminal domain 193 403 IPR002939 -
Trre6g02886 466 Gene3D - 215 249 - -
Trre6g02886 466 Gene3D - 250 283 - -
Trre6g02886 466 CDD DnaJ_zf 220 276 IPR001305 GO:0031072|GO:0051082
Trre6g02886 466 SUPERFAMILY HSP40/DnaJ peptide-binding domain 327 414 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02886 Trre-Chr6 26050685 26061388 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02886 69 145 C2H2 Transcription Factor Family AT1G74250 37.805 1.10e-08 55.5