Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02885 ATGAGAAGGTTCACGTGGTTAACGCCGTACCGGCGCCATTTTCTTTCCTCCGTTGCATCAGAACGAGATTCGTTCCGAAAATTCTTCTCCTCTCATCAATCATTATTGCTTTCACGAAGTTTGTTTGGTTGCAATTTTGATACAAAAAGGGAGGAATATCTAATTCCGAGAATTCCATTCAGACATCGTTATGTTTACGCTTCAGCATATTCTTCTTGCGCTGAACGAAACTATTATCAGATACTTGGTGTTTCTGAAAATGCTAGTCGGGATGAGATAAAGAAGGCATTTCATTTGCTTGCTAAAAAGTACCATCCAGATGCGAATAAGAATAATCCATCGGCAAAGAGGAAATTTCAAGATATAAGAGAAGCTTACGAGACATTGAGAGACCCTAAAAAGAGGGCAGAGTATAACAAGATACGTGCTCATGGTTCAGAGAACATGGAATATAGTAACAATTATGATGATGCAGAAAGATTTAAAAATGCATATCGTACTCATTTTTCTGATTCATTTCATAAAGTATTCTCTGAGATATTTGAAGAAGCAACAACTCAGTTCAAGTCAAATATAGAGGTGGAATTATCACTTACTTTCTCAGAAGCCGCTAGAGGATGCACCAAACATGTGTCATTTGATGCGTCAGTTCCCTGTGATAATTGCTATGGACAAGGATATCCACAAAATGCTACCCCAACAGTTTGTCCAACATGCAGGGGCTTAGGTCGAGTTACCATCCCTCCATTTACATCAACATGCATTACTTGTAAAGGATCTGGCCGCATCATTAAGGAGTTTTGTTTGTCATGTGGAGGATCTGGGGTTATTGAAGGGATTAAAGAAGTTAAAGTTACGATACCAGCAGGCGTGGATTCAGGAGATACAATCCATGTGCCAGAAGGTGGGAATGCTGCTGGAAGTGGTGGTCGACATGGAAGTTTATACATTAAAATAAAGGTGGTTGAGGATCCAGTCTTTGCGAGGGATGGTGCAGATATCTATGTGGAATCTAATATTAGCTTTACACAGGCGATTCTTGGTGGTGAAGTTGAAGTGCCTACCTTATCAGGGAAGATGCAAGTAAAGATACCTAAGGGTGTTCAACCAGGACAGCTGCTAGTATTTAGAGGCAAAGGACTGCCAAAACATGGGTATTTTGTACTCCATGGGGATCAGTATGTGCGCTTCCGTGTAAACTTTCCCATTGCAATCAATGAACGACAGCGTGCTATACTTGAAGAATTTGCAAAGGAAGAAATAACGCAGGGAAATAGTTCAATATCTGACGGAAATTGGTGGCAGCAAATTCTTGAATACACGACGGGTCCAAAGTTTATACTGGAACTATCTATGCTGATACTTTTCCTTGTCTTCATTAACAAAATGTTGAGCTGA 1398 0.402 MRRFTWLTPYRRHFLSSVASERDSFRKFFSSHQSLLLSRSLFGCNFDTKREEYLIPRIPFRHRYVYASAYSSCAERNYYQILGVSENASRDEIKKAFHLLAKKYHPDANKNNPSAKRKFQDIREAYETLRDPKKRAEYNKIRAHGSENMEYSNNYDDAERFKNAYRTHFSDSFHKVFSEIFEEATTQFKSNIEVELSLTFSEAARGCTKHVSFDASVPCDNCYGQGYPQNATPTVCPTCRGLGRVTIPPFTSTCITCKGSGRIIKEFCLSCGGSGVIEGIKEVKVTIPAGVDSGDTIHVPEGGNAAGSGGRHGSLYIKIKVVEDPVFARDGADIYVESNISFTQAILGGEVEVPTLSGKMQVKIPKGVQPGQLLVFRGKGLPKHGYFVLHGDQYVRFRVNFPIAINERQRAILEEFAKEEITQGNSSISDGNWWQQILEYTTGPKFILELSMLILFLVFINKMLS 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02885 465 ProSitePatterns Nt-dnaJ domain signature. 119 138 IPR018253 -
Trre6g02885 465 SUPERFAMILY HSP40/DnaJ peptide-binding domain 190 326 IPR008971 GO:0006457|GO:0051082
Trre6g02885 465 CDD DnaJ_C 190 402 - -
Trre6g02885 465 Pfam DnaJ domain 77 139 IPR001623 -
Trre6g02885 465 ProSiteProfiles dnaJ domain profile. 77 142 IPR001623 -
Trre6g02885 465 Gene3D DnaJ domain 73 190 IPR036869 -
Trre6g02885 465 PRINTS DnaJ domain signature 79 97 IPR001623 -
Trre6g02885 465 PRINTS DnaJ domain signature 134 153 IPR001623 -
Trre6g02885 465 PRINTS DnaJ domain signature 97 112 IPR001623 -
Trre6g02885 465 PRINTS DnaJ domain signature 114 134 IPR001623 -
Trre6g02885 465 Gene3D - 249 282 - -
Trre6g02885 465 Gene3D - 214 248 - -
Trre6g02885 465 Gene3D - 322 430 - -
Trre6g02885 465 SUPERFAMILY Chaperone J-domain 73 166 IPR036869 -
Trre6g02885 465 Pfam DnaJ central domain 219 275 IPR001305 GO:0031072|GO:0051082
Trre6g02885 465 CDD DnaJ 77 131 IPR001623 -
Trre6g02885 465 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 206 277 IPR036410 -
Trre6g02885 465 FunFam Chaperone protein dnaJ 1, mitochondrial 322 428 - -
Trre6g02885 465 CDD DnaJ_zf 219 275 IPR001305 GO:0031072|GO:0051082
Trre6g02885 465 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 40 421 - -
Trre6g02885 465 Gene3D - 191 320 - -
Trre6g02885 465 SMART dnaj_3 76 134 IPR001623 -
Trre6g02885 465 ProSiteProfiles Zinc finger CR-type profile. 206 280 IPR001305 GO:0031072|GO:0051082
Trre6g02885 465 Hamap Chaperone protein DnaJ [dnaJ]. 74 440 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Trre6g02885 465 Pfam DnaJ C terminal domain 192 402 IPR002939 -
Trre6g02885 465 SUPERFAMILY HSP40/DnaJ peptide-binding domain 326 413 IPR008971 GO:0006457|GO:0051082
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02885 Trre-Chr6 26050685 26061388 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02885 68 144 C2H2 Transcription Factor Family AT1G74250 36.585 3.06e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02885 - - gmx:100809440 691.034