Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02878 ATGGCCCTTTCTGAATCAAACGGCGACGTATTCCCATGGCTGAAATCCATGCCAGTTGCCCCCGAATACCGACCTACTCCGGCAGAATTCGAAGATCCGATCGGTTACATTTTCAAGATCGAAAAAGAAGCATCCAAATACGGTATCTGTAAAATCATTCCACCCTTTCCACCTTCACCTAAGAAAACCGCTATTGCTAACCTAAACAGGTCACTTCACAATTCCACATTCACTACACGTCAGCAACAGATCGGGTTCTGTCCCCGTAAGTCCCGACCCGTTAAACGACCCGTTTGGCAGAGTGGGGACCACTACACCTTTTCTGAGTTCGAAGCTAAAGCTAAATGGTTCGAGAAAAGTTACCTGAAGAAGCATAGTAGTAACAAGAAGGGTAATAATGGTGGTAGTGCTCTTGAAATGGAGACACTGTTTTGGAAAGCAACGGTTGATAAACCTTTTTCAGTTGAATATGCAAATGATATGCCAGGTTCTGCATTTTCTATGTCGTCGTCGTCGAAATGTCGTCATTCCGGTGAGGCTGCTTCGGTTGCTCATAGTGCTTGGAATATGAGAGGGGTTTCAAGGGCAAAAGGGTCTTTGTTGAGGTTTATGAAGGAAGAGATTCCTGGTGTTACTTCACCTATGGTTTATCTTGCTATGCTTTTTAGTTGGTTTGCTTGGCATGTTGAAGATCATGATCTTCATAGTTTGAATTATCTTCATATGGGTGCTTCCAAGACTTGGTATGGTGTTCCTAGAGATGCTGCTGTTGCTTTTGAAGATGTTGTTAGGGTTCATGGCTATGGTGGAGAGATTAACCCTCTTGTTACATTTTCTATTCTTGGTGAGAAAACCACAGTGATGTCACCAGAAGTGTTTATTAGTGCAGGTGTTCCATGCTGCAGGTTAGTGCAAAATGCTGGAGAATTTGTTGTGACATTTCCAAGAGCCTATCACACAGGGTTTAGTCATGGTTTTAATTGTGGAGAGGCAGCAAACATTGCAACACCTGAGTGGTTGAGGGTTGCTAAAGATGCTGCTATTCGGAGGGCTTCAATAAATTATCCTCCCATGGTTTCACATTTCCAGTTACTTTATGACCTTGCCTTAGCTTTGTGTTCAAGAGTCCCTGGGGGAATCAGTGCGGGACCACATAGTTCTCGTCTTAAAGATAAGAAGAAGGGTGAAGGAGACTCTGTAGTTAAAGAACTATTTGTCCAAGACGTGTTACGAAACAATGATCTGCTTCATGTACTTGGAAAAGAATCTTCTGTAGTACTTCTTCCTCGCAGTTCAGTTGACATTTCTATTTGCTCAAAATTACGTGTTGGATGTCAGCAACAAAAAGTGATCCCTGGATTTTCGATTAATGTATGCAATTCTGAGGGAATGAATTCCTCAAAAGGTTTTGTTTCTGATGATCTGGTATTCAACAGGAATTGCGGAATCGTCCAAGAAAAAAATTCCCATTCTGTGAAAGACGAGTTTACTCTGTCGTGCGAAGGGAAGGGGATTTCCCCATTTGATGCAAACAGTAACACATCCCCTTCAAGTTCCAAGCAGCTTCATAGAGGCAACGAAAGTGAAACTAGTCAAGGAGATGGATTGTCAGATCAGAGACTGTTTTCGTGTGTCACGTGTGGGCTATTAAACTTTTCATGTGTTGCTATTGTACGTCCTAGCGAACCAGCAGCTAGATATCTTATGTCTGCTGACTGTAGCTTCTTTAATGATTGGGTTGTTGGTTCTGGAGTACCTAGCAATAGATTTACTGTTGCCGGTGAAGATGAAAATATTTCTGAGCCAAATATTCATACAGCATGGACAAAGAAAAACGCCCAAGTAGAGGCTTTAAATACTGAAGGAGGAAATGGCAACACAGCTCTTGCATTATTGGCTTCAGCATATGGAAATTCTTCTGATTCTGAGGACGATGCAGTTGATGATCATGAATCAAATGCAATAAACTCTACACCAGAGAGTTTGCCTTCTAATGTTCAGGTTTCCCATGATAATCCCATGACTAGGCCTGATAAAGATGATATTCTTTCAGAGAGTACCAGTTACGAAGCACATAGATTTGAGGAGGATCAGGATTATAAAATCACTTCAGGAGTTGCATTTGAAAATACAAGGCGAATGTCTTATTCCACCACACATAGTTCCCAAGATGCTAATAATGCTGAAAAATCACTGTCAGTCGAAGCCATGGATGCTGTCAATCATAAAAATGCTTTATTGGTACCGCAATGTGATGAAGACTCATCTAGAATGCATGTATTCTGTCTAGAGCATGCTGTGGAAGCAGAGCAGCAACTTCGCCCAATAGGTGGAGCCCACATATTGCTCTTGTGTCATCCAGATTATCCCAAGATAGAGGCTGAAGCAAAGTTGGTGGCAGAAGATTTGGGGATTGATTACATGTGGAAGAATATTTCGTACAGGCATGGCACCAAAGAGGATGAGGAGAGGATCCAGTTAGCTGTGGATAGTGAGGAAGCGATTCCCGGGAGTGGGGACTGGGCTGTAAAGCTAGGAATAAATCTCTTTTATAGTGCAAATCTTAGCCGCTCTCCCCTTTATAGCAAGCAGATGCCTTACAATTCTGTAATATATTATGCATTTGGTCGTAGCTCTCAAGCAAGCTCACCCATAAAACCAAAGGTCTATCAGAGAAGGTCTGACAAGCAGAAAAAGGTAGTTGCTGGCAAATGGTGTGGTAAAGTTTGGATGTCTAATCAGGTCCATCCTCTTTTAGCAAAAAGGGATTATGAATATGTTGAGGATGAGAAAAGTTTACACGGATTGGTATTGCCTAATGTTAAACTTGAGGCATCTGGAAGTACCCCCAAAACTGAAACTGCTATTAAAAAATCAGGTAGGAAAAGGAAAACTGCCTTAGGCAGTAAACGAACCAGGAGAGGAAGATTTATTGAAAAAGATGCTGTTTTAGATAATTCTGCTGAAGATAAACCCAATCCTCGGCTAAGGAGGGTTCTTAAGCAAACCAGGGGTGTTGAGAAAGATGGTGCACCTGAAAGTGATGCAGTTTCTGATGATTCGATTGATGATGATTATCGCATGCGACGTATGAGTTTTAATGTCAAAAAAGCTAAACTTATTGACAATGATGCGGTATCAGGTGATGCAGTGGACTATGATTCTGATTGTCATCAGATGGGAGAACTTGGAAGCAAGCACGTTGAATATACAGAGGGAGACTCAATTTCAGAGGATTCTTTGGATGTTGGTTCACTTCAACACAGAAAGACTTCTAGAAACAAGCATGCCAACTACACAAGTGAAGAAGATGCAATTTCTGATGACCAAATGGGGAATGGTTGTCAGATGCAGCAAAAGAGAATTCCTAAAAGCAGGCAAGGCAAATCCCTTGCTGAAAAAGATTCAGTGATATCAGATGACCAACTGGAGCTGAACATGCAGAAGCAGCGGCGGACTAATTCTAGAACTAGGAAAGCCAAATACCTCACCGAAGAGGATATTGTATCAGATAACCAAATGAATGTCTACCGTCGCAAGTACCAAAAAAGGACAGTTAAAGTCAGGCAAGCCAGATGTGTAGCAGGGGAAAATTTAATGTCTGATGACCAATTGGAGGATCCCTTTCTAAACCAGAAACCAAGTATTTCTAGAAGGAAAAACAAAGGCATTGATAGAGAAGTTAAAAATGAAATGTCTGATGACCAACTGGATGATCACTTTCAGAAGCAGCAGAGAAAAATTCCCAAGAGCAGGAGGCACACCAAACAGACTGATGAAGAAGTTATTGATGACTCGGCTGAAGATAATGTGAGTTTAGATAATGAAATGGAAGATGATTCTCTTCAACAGTACAAGAGAACTCATCCAACTAAACAATCCAAACCAAAGACACTTAGACAAATGAAGCAATCCAAATCCCTCCAGATAAAAAACCAGACACCTAAGCCAGGGAAACGAGGGGTTGGGCTGCGGATGAAATCACAGGCTGCTCAGCAACTAAAGCAGTCTTGTTTGCGGAGTAAACAATCTGGTAGCTCCAGAGAGCCTAGTTTAGATATGGAAGAGGAGGAAGAAGGTGGACCTAGCACACGCCTTAGAAAGAGAGTCCAAAAAACTCAGGAGTCTGAAGTAAAATCCAAAGACAAGCAAACCAAAAGGAAAAGGGCAAAGGATGTTACAGCTACAAAGGTTTCAGCTCGTGATCCCAAAACAGAGGACGAGGGAGCAGAATATCAGTGTGACATTGAGGGATGCACCATGAGTTTTGAATCAAAACAAGAATTGTTGCACCATAAGAGAAATGTTTGTCCAGTAAAAGGTTGTGGAAAAAAGTTCTTCTCACACAAATATCTAGTGCAGCACCGGCGAGTTCATGAAGATGACCGCCCCCTGAAGTGCCCCTGGAAGGGGTGCAAGATGTCTTTCAAGTGGGCTTGGGCTCGAACCGAGCATATTCGAGTCCACACTGGTGCACGTCCTTATGCGTGTGCCGAACCAGGTTGTGGGCAAACATTCAGATTTGTGTCTGATTTCAGTCGTCACAAGCGAAAGACTGGGCATTTAACAAAGAAGAGTCGTCAATAG 4587 0.4223 MALSESNGDVFPWLKSMPVAPEYRPTPAEFEDPIGYIFKIEKEASKYGICKIIPPFPPSPKKTAIANLNRSLHNSTFTTRQQQIGFCPRKSRPVKRPVWQSGDHYTFSEFEAKAKWFEKSYLKKHSSNKKGNNGGSALEMETLFWKATVDKPFSVEYANDMPGSAFSMSSSSKCRHSGEAASVAHSAWNMRGVSRAKGSLLRFMKEEIPGVTSPMVYLAMLFSWFAWHVEDHDLHSLNYLHMGASKTWYGVPRDAAVAFEDVVRVHGYGGEINPLVTFSILGEKTTVMSPEVFISAGVPCCRLVQNAGEFVVTFPRAYHTGFSHGFNCGEAANIATPEWLRVAKDAAIRRASINYPPMVSHFQLLYDLALALCSRVPGGISAGPHSSRLKDKKKGEGDSVVKELFVQDVLRNNDLLHVLGKESSVVLLPRSSVDISICSKLRVGCQQQKVIPGFSINVCNSEGMNSSKGFVSDDLVFNRNCGIVQEKNSHSVKDEFTLSCEGKGISPFDANSNTSPSSSKQLHRGNESETSQGDGLSDQRLFSCVTCGLLNFSCVAIVRPSEPAARYLMSADCSFFNDWVVGSGVPSNRFTVAGEDENISEPNIHTAWTKKNAQVEALNTEGGNGNTALALLASAYGNSSDSEDDAVDDHESNAINSTPESLPSNVQVSHDNPMTRPDKDDILSESTSYEAHRFEEDQDYKITSGVAFENTRRMSYSTTHSSQDANNAEKSLSVEAMDAVNHKNALLVPQCDEDSSRMHVFCLEHAVEAEQQLRPIGGAHILLLCHPDYPKIEAEAKLVAEDLGIDYMWKNISYRHGTKEDEERIQLAVDSEEAIPGSGDWAVKLGINLFYSANLSRSPLYSKQMPYNSVIYYAFGRSSQASSPIKPKVYQRRSDKQKKVVAGKWCGKVWMSNQVHPLLAKRDYEYVEDEKSLHGLVLPNVKLEASGSTPKTETAIKKSGRKRKTALGSKRTRRGRFIEKDAVLDNSAEDKPNPRLRRVLKQTRGVEKDGAPESDAVSDDSIDDDYRMRRMSFNVKKAKLIDNDAVSGDAVDYDSDCHQMGELGSKHVEYTEGDSISEDSLDVGSLQHRKTSRNKHANYTSEEDAISDDQMGNGCQMQQKRIPKSRQGKSLAEKDSVISDDQLELNMQKQRRTNSRTRKAKYLTEEDIVSDNQMNVYRRKYQKRTVKVRQARCVAGENLMSDDQLEDPFLNQKPSISRRKNKGIDREVKNEMSDDQLDDHFQKQQRKIPKSRRHTKQTDEEVIDDSAEDNVSLDNEMEDDSLQQYKRTHPTKQSKPKTLRQMKQSKSLQIKNQTPKPGKRGVGLRMKSQAAQQLKQSCLRSKQSGSSREPSLDMEEEEEGGPSTRLRKRVQKTQESEVKSKDKQTKRKRAKDVTATKVSARDPKTEDEGAEYQCDIEGCTMSFESKQELLHHKRNVCPVKGCGKKFFSHKYLVQHRRVHEDDRPLKCPWKGCKMSFKWAWARTEHIRVHTGARPYACAEPGCGQTFRFVSDFSRHKRKTGHLTKKSRQ 1528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02878 1528 ProSitePatterns Zinc finger C2H2 type domain signature. 1437 1459 IPR013087 -
Trre6g02878 1528 SUPERFAMILY Clavaminate synthase-like 196 365 - -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 1205 1404 - -
Trre6g02878 1528 Gene3D Classic Zinc Finger 1433 1519 - -
Trre6g02878 1528 ProSiteProfiles Zinc finger C2H2 type domain profile. 1465 1494 IPR013087 -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 1358 1404 - -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 507 536 - -
Trre6g02878 1528 Gene3D Cupin 13 355 - -
Trre6g02878 1528 SMART JmjN_1 19 60 IPR003349 -
Trre6g02878 1528 SUPERFAMILY beta-beta-alpha zinc fingers 1483 1517 IPR036236 -
Trre6g02878 1528 SUPERFAMILY beta-beta-alpha zinc fingers 1451 1493 IPR036236 -
Trre6g02878 1528 ProSitePatterns Zinc finger C2H2 type domain signature. 1497 1521 IPR013087 -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 639 681 - -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 972 1021 - -
Trre6g02878 1528 FunFam Probable lysine-specific demethylase ELF6 1492 1521 - -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 1297 1314 - -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 947 1021 - -
Trre6g02878 1528 ProSiteProfiles Zinc finger C2H2 type domain profile. 1435 1464 IPR013087 -
Trre6g02878 1528 SMART c2h2final6 1465 1489 IPR013087 -
Trre6g02878 1528 SMART c2h2final6 1495 1521 IPR013087 -
Trre6g02878 1528 SMART c2h2final6 1412 1434 IPR013087 -
Trre6g02878 1528 SMART c2h2final6 1435 1459 IPR013087 -
Trre6g02878 1528 PANTHER LYSINE-SPECIFIC DEMETHYLASE 12 1154 - -
Trre6g02878 1528 ProSiteProfiles JmjC domain profile. 182 351 IPR003347 -
Trre6g02878 1528 Pfam JmjC domain, hydroxylase 215 333 IPR003347 -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 1262 1276 - -
Trre6g02878 1528 Pfam jmjN domain 21 54 IPR003349 -
Trre6g02878 1528 ProSiteProfiles JmjN domain profile. 20 61 IPR003349 -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 652 672 - -
Trre6g02878 1528 FunFam Probable lysine-specific demethylase ELF6 13 355 - -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 1218 1245 - -
Trre6g02878 1528 ProSiteProfiles Zinc finger C2H2 type domain profile. 1495 1526 IPR013087 -
Trre6g02878 1528 ProSitePatterns Zinc finger C2H2 type domain signature. 1467 1489 IPR013087 -
Trre6g02878 1528 MobiDBLite consensus disorder prediction 1329 1348 - -
Trre6g02878 1528 FunFam Probable lysine-specific demethylase ELF6 1462 1491 - -
Trre6g02878 1528 SMART cupin_9 182 351 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02878 Trre-Chr6 25865642 25873946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02878 1311 1526 C2H2 Transcription Factor Family AT3G48430 55.702 6.08e-69 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Trre6g02878 JmjC 9.2e-36 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02878 - - psat:127084261 2528.44