Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02873 ATGATGGATGGGCGGCGACATTCTGTTGATATACCGATTTCTAAGACTCTTGTAGCATTGAGGAGAGTGAGGTCATTGAGGGATCCATCAACTAATTCTATGACCAAACATTCTCCTTTGATTGACAATTTACATTGGGAAAATGGTTCCGGCAATGGGATTTCTCTGATGTTTCCTAATGATGATGTTCACGCTTTTGATTCCGATGATAACCTTGCCTACAGATCAAGTAATTTATGTTTTAAGGGTCAAAGAGACCTGAATGCTGCTGGTTTTGAATCGAATCATGCTATGTTGAATTCAAGGCTGAATCAACGAAGCGTTTATGGAAATAAATCACCTAGTGAAAGCTGTGGTAGCAACCATGGTGGTAGAGGATTGGATATTAACGATTTCAAGGATGAGGAATTATGCTATAGAAAAACCGGAAGATCGTCTAAATTAGGGAGAATAGATCATATTAAGTTTGCCAAAAAACCAACTGTTGTGCCTGGAGATATAATTAGCCACTTGGGTAGTCCATGTCTCTCTCCTCGTGATGTTTTATCGAACCATGGTTCCTTTGAGAATATAAATCATGATTTTGGTGTTCTAAATAATAGTTGTAATGAATGTGGAATAAGCTGTTGTTGGTCAAAATCACCGAGATTTAGAGAATCAAATCTTTATTGTGAGAAAGAAGACCGTCCCTTGATATTAAACGGAGCTGATGACACGAATCTTCATGGACATAGAAATGTGAGACACGATAGTGGCGAAATTAGTCCAAAATTGGAAACTCCTAGAATGTTATCCATGAAATTCAGGCCTAAATCATTTGGTGATTTGGTGGGACAAGATGTGGTAGTTAGGTCTCTTTTGAATGCAATCTCTAGTGGAAGGATAACATCATTTTATCTCTTCCATGGTCCGCGCGGTACCGGCAAGACATCGGCTTCTAGAATATTTGGTTCTGCTCTGAACTGCCTCTCTGTTGAGGAGCAGAGACCATGTGGCTTGTGTAGAGAATGTGCTTTATTTTTTTCTGGAAGAAGTAAAGATGTTAAGGTGGTGGATTCTGTGAGAATCAATCATACAGACCAGGTTAAATCTCTCGTTAAGAATGCGTGTACACCTCCAGTTTCGTCGCGTTTTAAGGTTTTCATTATTGACGAGTGCCAGTTATTGAACGAGGAGACGTGGGCGTGCCTTTCAAATAACCTAGAGAACATTTCTCAACATGCGGTCTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCTCAAAGTGCAGTTTCCCGTGCACAGAGGTATTACTTTCCGAAGGTTAAAGACGCTGATATTGCACGCAGATTGGAAACAATTTGTGCAGAAGAAGGTCTTGATTATGAGCAGGATGCTTTGGACCTTATTGCCGTAAAATCCTGTGGTTCTGTTAGGGACGCAGAAATTATGCTTGATCAGCTGAGTTTGCTCGGTAAAAAGATCAAAATTTCCTTTGTTTACGAGCTTACTGGGATTGTTTCCGATGATGAATTGCTTGATTTGCTGGATCTGGCGATGTCCCCAGACACTACAAATACAGTTATAAGAGCTCGTGAGCTGATGAGATCGAGGATAGATCCTTTGCAACTTGTGTCACAGTTGGCAAATCTCATAATGGACATCCTTGCGGGGAAATGTGATTATGAAGCCAGAAGTAGATTTTCTAGTAGATATACTTCCGAAGCAGACCTTCAGAAACTAAGTCATGCATTGAGAATACTTTCTGAAGCCGAGAAACAATTACGAACCTCGAAAAATCAAACAACATGGTTCACTGTAGCTCTTCTACAGTTAAGCTCTATTGATTATCCTTCCACCAATGCAGATAATACCAAGTCGTTTCTGAGAAGTGCGTGCAATGGAGGGCAAAGCATGGAACATCGTGCTACAGGTGGTTGTGAAAACAAGTCATTTAGATTAGTGGCGCACGACGATCACGAAGGAACACTAGATTCCATATGGTATAAAGCTACTGGGATATGTCAATCTAGTCAACTCAAAACTTTTCTCAGGAAGAAGGGAAAGTTGTCTTCGCTTCATGTTCATCAATCGACATCTTGTCTTGCAATTGCGGAGTTGGAATTCGGCCATCGCCGCCATGTATCCAAGGCTGAGAAGTCATGGAAATTGATTGCAAGTTCCTTGCAAAGCATATTGGGTTGTAACATTGAGTTGAGAATCACTTATGTACCTCATACTTCTAACTCACCGAAGAGGTTATCTTTAAACATCTTCAGTTGTTCGCACAAAATACAACAGAAACCATTGTCGTCCAATGATCAAGAAAGTGAAATAGACTATGCTTATTACACTTGTGAAAATCCCATTTTGAAGAATAAAACTCTATCTTCTTCTGCTGACTGTGGATCTCGGATGCCACCATCAAAGTCTTACAGCAAAATGGACGTCGTAACAACACTGAGGAGTTGTGAAGGGAATTTGCTCAGCTCAAGAGAAAGATTTTTGAATCGGTCTCTTCAAGAGAAAATGGGAGCATCATGTTCTAGAGTTGATGATTCTTACAATGAAGAGGGACATATTTGTGCACATTTAGTTCCATCAAAAATCAACTCAGATAATCAGTCTAACTGTTTTCCTCAAACTCTTTGGCTTCAAAAGAAGCTCAGAACATCAAAGTCATCCAAGTTGTCTTTTCAAGGTATCTAA 2691 0.4002 MMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMTKHSPLIDNLHWENGSGNGISLMFPNDDVHAFDSDDNLAYRSSNLCFKGQRDLNAAGFESNHAMLNSRLNQRSVYGNKSPSESCGSNHGGRGLDINDFKDEELCYRKTGRSSKLGRIDHIKFAKKPTVVPGDIISHLGSPCLSPRDVLSNHGSFENINHDFGVLNNSCNECGISCCWSKSPRFRESNLYCEKEDRPLILNGADDTNLHGHRNVRHDSGEISPKLETPRMLSMKFRPKSFGDLVGQDVVVRSLLNAISSGRITSFYLFHGPRGTGKTSASRIFGSALNCLSVEEQRPCGLCRECALFFSGRSKDVKVVDSVRINHTDQVKSLVKNACTPPVSSRFKVFIIDECQLLNEETWACLSNNLENISQHAVFVMITPDLDKLPQSAVSRAQRYYFPKVKDADIARRLETICAEEGLDYEQDALDLIAVKSCGSVRDAEIMLDQLSLLGKKIKISFVYELTGIVSDDELLDLLDLAMSPDTTNTVIRARELMRSRIDPLQLVSQLANLIMDILAGKCDYEARSRFSSRYTSEADLQKLSHALRILSEAEKQLRTSKNQTTWFTVALLQLSSIDYPSTNADNTKSFLRSACNGGQSMEHRATGGCENKSFRLVAHDDHEGTLDSIWYKATGICQSSQLKTFLRKKGKLSSLHVHQSTSCLAIAELEFGHRRHVSKAEKSWKLIASSLQSILGCNIELRITYVPHTSNSPKRLSLNIFSCSHKIQQKPLSSNDQESEIDYAYYTCENPILKNKTLSSSADCGSRMPPSKSYSKMDVVTTLRSCEGNLLSSRERFLNRSLQEKMGASCSRVDDSYNEEGHICAHLVPSKINSDNQSNCFPQTLWLQKKLRTSKSSKLSFQGI 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02873 896 CDD HLD_clamp_pol_III_gamma_tau 436 499 IPR045085 -
Trre6g02873 896 FunFam DNA polymerase III subunit gamma/tau 437 499 - -
Trre6g02873 896 Pfam DNA polymerase III, delta subunit 279 436 - -
Trre6g02873 896 NCBIfam DNA polymerase III subunit gamma/tau 263 606 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Trre6g02873 896 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 263 485 IPR027417 -
Trre6g02873 896 Coils Coil 575 595 - -
Trre6g02873 896 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 265 683 - -
Trre6g02873 896 Gene3D - 437 499 - -
Trre6g02873 896 Gene3D - 257 434 IPR027417 -
Trre6g02873 896 Gene3D - 500 610 - -
Trre6g02873 896 SUPERFAMILY post-AAA+ oligomerization domain-like 500 607 IPR008921 GO:0003677|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02873 Trre-Chr6 25732510 25735729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02873 254 501 Core DNA Replication Machinery Family AT1G21690 27.165 2.08e-15 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02873 - - tpra:123897029 1611.28