Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02871 ATGCAGACCCATACCACAGATACAAGAAAACCAGCATTCAGGTGGCTAGGCTTAAAAGGGAAGACATGGAATGAGGCATTACTTTACAATTCAAAACAAAATGAGTCTAGGAAAAGGGCATTTGGAAATGATGTTACAAACAGTAGCTTTGCATACTGTTACAACAACATGGTAGTGTTTATTGTTGGTAGTTCTAAAATATTATCATCATTGGATCATAAAAAACCATTGTTGGAACAGCTTGAGAATGCTTTTTCCATTAAGGAATCTCCAATTTGGATGGATTGTAGTACAACTGCTGAGTGTAGGGCAATAGAGAATGCTTTTGGTGGTGCTTTGGAGTTGGCTAAAGTGACCGGATCGCGTGCTTATGAAAGATTTACGGGTCCTCAGATTAAGAAAATATCTGATCATCAGCCGGAAATTTATAATAATACCGAGAGAATCTCGCTTGTTAATTCCTTTATGGCGTCACTTTTTATCGGTGCTTATGCTGCTATTGATCATTCTGATGGTGCAGGCATGAATTTAATGGACATCAAGGAAAAGGCTTGGTCTAAAGTTGCACTTGAGGCAACTGCCACTGATTTGGAGTCAAAACTCGGAAATTTGGCCCCTGCGTATGGTGTTGTTGGAAATATTGCTTCGTATTTTGTTGAGAGGTATAACTTTAACAAGGATTGCTTGGTTATTTAA 696 0.3851 MQTHTTDTRKPAFRWLGLKGKTWNEALLYNSKQNESRKRAFGNDVTNSSFAYCYNNMVVFIVGSSKILSSLDHKKPLLEQLENAFSIKESPIWMDCSTTAECRAIENAFGGALELAKVTGSRAYERFTGPQIKKISDHQPEIYNNTERISLVNSFMASLFIGAYAAIDHSDGAGMNLMDIKEKAWSKVALEATATDLESKLGNLAPAYGVVGNIASYFVERYNFNKDCLVI 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02871 231 Gene3D - 37 231 - -
Trre6g02871 231 SUPERFAMILY Actin-like ATPase domain 91 230 IPR043129 -
Trre6g02871 231 PANTHER SUGAR KINASE 73 231 - -
Trre6g02871 231 Pfam FGGY family of carbohydrate kinases, N-terminal domain 92 223 IPR018484 GO:0005975|GO:0016301
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02871 Trre-Chr6 25719962 25721086 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02871 2 47 E2F-DP Transcription Factor Family AT3G48160 57.143 7.13e-09 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02871 K00854 - gmx:100778495 291.582