Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02869 ATGCCTACTCTCATTTCCTCTTCACCTCTTCAAAACCCTGAATTGGTAGTCCAAGAAGTTAACAGGAAAATCAATGCCTCGGTAGCAAGAAGGAATTTAGGATACCTGTCTTGTGGGAGTGGAAATCCGATCGATGATTGTTGGAGGTGCGACTCGAATTGGGAGAAGAACAGACAAAGGCTAGCAGATTGTGCAATTGGGTTCGGGAAGAACGCCATTGGTGGAAAAAACGGTAAAATCTACATTGTAAATGATGCCAATGATGACAATCCGGTGAACCCAAAGCCGGGAACACTCCGCCACGCTGTGATCCAAGTGGAACCATTATGGATAATCTTCGCCAGAGACATGGTGATCAAGTTAAAAGAAGAATTAATCATGAACTCTTTCAAAACAATTGACGGTAGAGGCGCGAGTGTGCACATTGCTGGTGGTCCATGCATTACCATACAATATGTCACCAATATTATCATCCATGGAATAAATATACATGATTGTAAACAAGGTGGGAATGCTATGGTAAGGGACTCCCCGCGACATTTTGGGTGGAGGACTATATCGGACGGTGATGGTGTGTCGATTTTTGGTGGAAGTCATGTTTGGGTTGATCATTGTTCTTTGTCTAATTGTAAAGATGGTTTGATTGATGCTATTCATGGATCCACAGCTATAACAATCTCTAACAATTACATGACACACCATGATAAAGTCATGTTGTTGGGTCATAGTGATTCTTATACTCAAGATAAGAATATGCAAGTCACAATTGCTTTTAACCACTTTGGTGAAGGTCTTGTTCAAAGGATGCCAAGGTGTAGGCTTGGATATTTCCATGTAGTGAACAATGACTACACTCACTGGGAAATGTATGCCATTGGAGGAAGTGCTAATCCAACCATTAACAGTCAAGGAAACAGATTTGTTGCTCCTGATAACAGGTTCAGCAAAGAGGTGACAAAGTATGAAGATGCAGCTGAGAGTAAATGGAAGCATTGGAATTGGAGATCAGAAGGAGACTTAATGGTAAATGGTGCATTTTTCACTGCATCAGGTGGTGGAGCTTCATCTAGCTATGCAAGAGCTTCAAGCTTAAGTGCAAGACCATCTTCCCTTGTCGGTTCCATAACAACAGCAGCTGGTACACTTAATTGTAAGAAAGGCTCACCTTGCTAG 1173 0.4194 MPTLISSSPLQNPELVVQEVNRKINASVARRNLGYLSCGSGNPIDDCWRCDSNWEKNRQRLADCAIGFGKNAIGGKNGKIYIVNDANDDNPVNPKPGTLRHAVIQVEPLWIIFARDMVIKLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGINIHDCKQGGNAMVRDSPRHFGWRTISDGDGVSIFGGSHVWVDHCSLSNCKDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKYEDAAESKWKHWNWRSEGDLMVNGAFFTASGGGASSSYARASSLSARPSSLVGSITTAAGTLNCKKGSPC 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02869 390 PANTHER PECTATE LYASE 18-RELATED 11 388 IPR045032 GO:0030570
Trre6g02869 390 FunFam Pectate lyase 41 383 - -
Trre6g02869 390 Pfam Pectate lyase 123 307 IPR002022 -
Trre6g02869 390 Gene3D - 41 383 IPR012334 -
Trre6g02869 390 SUPERFAMILY Pectin lyase-like 20 384 IPR011050 -
Trre6g02869 390 SMART amb_all 116 313 IPR002022 -
Trre6g02869 390 PRINTS Pollen allergen Amb family signature 64 81 IPR018082 -
Trre6g02869 390 PRINTS Pollen allergen Amb family signature 124 140 IPR018082 -
Trre6g02869 390 PRINTS Pollen allergen Amb family signature 361 384 IPR018082 -
Trre6g02869 390 PRINTS Pollen allergen Amb family signature 332 356 IPR018082 -
Trre6g02869 390 PRINTS Pollen allergen Amb family signature 88 113 IPR018082 -
Trre6g02869 390 PRINTS Pollen allergen Amb family signature 290 309 IPR018082 -
Trre6g02869 390 PRINTS Pollen allergen Amb family signature 268 287 IPR018082 -
Trre6g02869 390 PRINTS Pollen allergen Amb family signature 188 209 IPR018082 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02869 Trre-Chr6 25671805 25674402 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02869 4 390 Polysaccharide Lyase AT5G63180 80.206 0.0 651
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02869 K01728 - gmx:100779940 712.605