Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02856 ATGGCTAAGAACAATAACCTCTTATTCTTCTTATTGTTCTTGTCTCTTCTTTTTTCCATTCATGCTAAACTCCAACTTCACCCTTCAGACACAAAAGCTCTCACAACTCTCCAAAACAACCTCGGACTAATCAACCTTAACACTACAAATCACCCGTGTAATGCTGAGGGTGTGTTCTGTGAGAGAAGACTCAATAACAATGAAAGCTATTCTCTCAGAGTAACAAAACTTGTTTTCAAATCAAAACAACTCAGAGGAACACTTTCTTCAGCAATTGGAAAACTTACAGAGCTCAAAGAACTCTCTCTTTCAAACAACAAACTCGTTGACCGAATCCCACCTTCCATAGTTGACTGTAGAAAGCTTGAAATTCTTAACCTTGCTAATAATCTTTTCTCCGGTGAAGTTCCTTCTGAATTACCTTCTCTCATTCGTCTTCGTTTTCTTGATATCTCTGGGAATAAACTCTCTGGAAACTTGAATTTCCTTCGTTATTTTCCCAATCTGGAAACTCTCTCTGTTGCAGACAATCATTTTACAGGGAGAGTTCCTGCTTCTGTTCGTTCTTTTCGCAATCTTAGACAGTTTAACTTCTCTGGTAACCGTTTTCTTGAAGGCGTGCCGGTGAATCAGAAGATTCTTGAATATCAAGATACTGATGATACTGTTCCTAAACGCTATATCCTTGCTGAGAATTCAAATTCAAGTGCAACAAGGAGGACTCGTCACTCTCCAGCAAGTGCTCCAGCTCCTGGTCCTGCAGCAGCAGGTGGTAAACACAAGCATAAGAAGAGCAAGAGGAAGCTAGCTGGATGGATTCTTGGGTTTATAGCGGGAGCATTTGCCGGAATACTTTCCGGTTTTGTGTTTTCATTGCTGTTTAAGTTGGCTTTGGCTTTGGTTAAAGGAAAAGGAAAGGGTTCTGGTCCGGCAATTTATAGTTCATTGATTAAGAAAGCTGAGGATTTAGCTTTCTTAGAGAAAGAAGACGGCTTAGCTTCGTTGGAAATCATTGGAAGAGGTGGATGTGGTGAGGTTTACAAGGCGGAATTACCAGGAAGTAATGGTAAAATGATTGCTATCAAGAAGATTATTCAGCCACCTAAGGATGCAGCTGAGTTAGCTGAAGAAGATAGTAAGATTTTGCATACTAAGATGAGGCAAATTAAGTCAGAGATTGATACCGTTGGTCAGATTCGTCATCGAAACCTTTTGCCTTTGTTGGCTCATATTTCTAGACCTGATTGTCATTACCTTGTGTATGAGTTCATGAAGAATGGTAGTTTGCAGGATATGTTGACTAAAGTTGAAAGAGGTGAAGCGGAGTTGGATTGGTTGTCAAGGCATAAGATTGCGCTTGGTGTCGCAGCTGGTCTTGAATACCTTCACATGAGCCATAGTCCGCGTATAATTCATCGAGATCTCAAGCCTGCAAACATTCTTCTTGATGATGATATGGAAGCTAGGATTGCGGATTTTGGACTTGCCAAAGCAATGCCCGATGCACAGACGCATATCAGTACTTCAAAAGTGGCTGGCACTGTGGGATACATCGCTCCTGAGTATCATCAGATATTCAAATTCAGTGACAAGTGTGACATATATAGCTTTGGTGTTATGCTTGGTGTTTTGGTGATGGGAAAACTTCCTTCTGATGATTTTTTCCAGCACACGGACGAGATGAGTTTGGTCAAGTGGATGAGAAATACTATAATTTCAGAAAATCCGAAGGACGCAATTGATGCAAGGCTCATTGGTAATGGTTTTGAGGAGCAGATGCTTCTGGTTTTGAAGATTGCCTGCTTTTGCACCATGGATAATCCTAAGGAGAGGCCTGACAGTAAGAATGTTAGGATTATGTTGTACCAAATTAAGCACTAG 1881 0.4083 MAKNNNLLFFLLFLSLLFSIHAKLQLHPSDTKALTTLQNNLGLINLNTTNHPCNAEGVFCERRLNNNESYSLRVTKLVFKSKQLRGTLSSAIGKLTELKELSLSNNKLVDRIPPSIVDCRKLEILNLANNLFSGEVPSELPSLIRLRFLDISGNKLSGNLNFLRYFPNLETLSVADNHFTGRVPASVRSFRNLRQFNFSGNRFLEGVPVNQKILEYQDTDDTVPKRYILAENSNSSATRRTRHSPASAPAPGPAAAGGKHKHKKSKRKLAGWILGFIAGAFAGILSGFVFSLLFKLALALVKGKGKGSGPAIYSSLIKKAEDLAFLEKEDGLASLEIIGRGGCGEVYKAELPGSNGKMIAIKKIIQPPKDAAELAEEDSKILHTKMRQIKSEIDTVGQIRHRNLLPLLAHISRPDCHYLVYEFMKNGSLQDMLTKVERGEAELDWLSRHKIALGVAAGLEYLHMSHSPRIIHRDLKPANILLDDDMEARIADFGLAKAMPDAQTHISTSKVAGTVGYIAPEYHQIFKFSDKCDIYSFGVMLGVLVMGKLPSDDFFQHTDEMSLVKWMRNTIISENPKDAIDARLIGNGFEEQMLLVLKIACFCTMDNPKERPDSKNVRIMLYQIKH 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02856 626 Pfam Leucine rich repeat 97 156 IPR001611 GO:0005515
Trre6g02856 626 SMART serkin_6 332 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02856 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 470 482 IPR008271 GO:0004672|GO:0006468
Trre6g02856 626 FunFam Leucine-rich repeat receptor-like protein kinase 424 626 - -
Trre6g02856 626 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 69 160 - -
Trre6g02856 626 FunFam leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 319 423 - -
Trre6g02856 626 SUPERFAMILY L domain-like 51 206 - -
Trre6g02856 626 Gene3D Phosphorylase Kinase; domain 1 321 423 - -
Trre6g02856 626 SUPERFAMILY Protein kinase-like (PK-like) 326 624 IPR011009 -
Trre6g02856 626 Gene3D Transferase(Phosphotransferase) domain 1 424 626 - -
Trre6g02856 626 MobiDBLite consensus disorder prediction 234 263 - -
Trre6g02856 626 Pfam Protein kinase domain 335 576 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02856 626 Gene3D Ribonuclease Inhibitor 21 217 IPR032675 -
Trre6g02856 626 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 56 625 - -
Trre6g02856 626 ProSiteProfiles Protein kinase domain profile. 332 626 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02856 Trre-Chr6 25590070 25591950 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02856 7 626 Receptor kinase-like Gene Family AT2G31880 63.477 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-2 Trre6g02856 Pkinase 7.4e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02856 - - gmx:100811980 868.996