Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02849 ATGTCTATCACTTCCACTACTACCCCTCTCTTCAAATCCCTTACCATGGCCGCCGAATCATCATCCCGCCTCTTCTCTTCACCCTCCTCCCTCTTCTACCCCAAAACCAAACCCACTTTCTTCAAACTTCCCTCTCTCAAACTTAATCTCTCCCTCAAAACTAATCGCTCTCTCGCTCCTTCCTTGTTCGTCGCTCAAGAAGGCGACACCCTAACCACTTCACCAGACGAACCCGGACTTCTCGATTGGGAACCCACTGCCGAAACTGAGGAAACTGGTGCTGCTGATGAAGATTCTTCCGAAGGAGATTTCGTTGAACCACCCGAAGATGCTAAATTGTTTGTTGGAAATTTGCCTTATAATGTTGATAGTGAGAAATTAGCCATGCTTTTTGGACAGGCTGGTACCGTCGAGATTGCTGAGGTTATTTATAACAGGGATACTGACCAGAGTCGTGGATTTGGATTTGTAACCATGAGTACTGTTGAAGAAGCTGAGTCTGCTGTCCAGAAGTTTAACCGCTATGATTATGACGGAAGATCGTTGACTGTTAATGTAGCTTCTCCAAGAGGATCTCGGCCTGAGCGTGTTGAGCGTCAACCTCGTACTTTTGAACCTGCCTTAAGAGTTTATGTTGGTAACTTGGCATGGGAAGTTGATGATGCTAGGCTTGAACAAGTTTTCAGTGAACATGGTAAGGTTGTCAATGCTCGAGTAATCTATGATAGGGAGACTGGTCGATCACGTGGCTTTGGCTTTGTCACATTTTCTGATGAGACGGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGAGCGTAGGACAATAAGAGTGAGTGTTGCTGAAGACAGGCCCAGGCGTAACTCATTTTGA 882 0.4592 MSITSTTTPLFKSLTMAAESSSRLFSSPSSLFYPKTKPTFFKLPSLKLNLSLKTNRSLAPSLFVAQEGDTLTTSPDEPGLLDWEPTAETEETGAADEDSSEGDFVEPPEDAKLFVGNLPYNVDSEKLAMLFGQAGTVEIAEVIYNRDTDQSRGFGFVTMSTVEEAESAVQKFNRYDYDGRSLTVNVASPRGSRPERVERQPRTFEPALRVYVGNLAWEVDDARLEQVFSEHGKVVNARVIYDRETGRSRGFGFVTFSDETEMNDAIAALDGQSLERRTIRVSVAEDRPRRNSF 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02849 293 SUPERFAMILY RNA-binding domain, RBD 107 201 IPR035979 GO:0003676
Trre6g02849 293 PANTHER OS02G0815200 PROTEIN 20 288 - -
Trre6g02849 293 CDD RRM2_NsCP33_like 209 284 - -
Trre6g02849 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 113 182 IPR000504 GO:0003723
Trre6g02849 293 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 210 280 IPR000504 GO:0003723
Trre6g02849 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 208 286 IPR000504 GO:0003723
Trre6g02849 293 MobiDBLite consensus disorder prediction 88 108 - -
Trre6g02849 293 Gene3D - 196 293 IPR012677 -
Trre6g02849 293 MobiDBLite consensus disorder prediction 89 104 - -
Trre6g02849 293 Gene3D - 81 195 IPR012677 -
Trre6g02849 293 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 111 189 IPR000504 GO:0003723
Trre6g02849 293 SUPERFAMILY RNA-binding domain, RBD 203 291 IPR035979 GO:0003676
Trre6g02849 293 FunFam 31 kDa ribonucleoprotein, chloroplastic 198 292 - -
Trre6g02849 293 SMART rrm1_1 209 282 IPR000504 GO:0003723
Trre6g02849 293 SMART rrm1_1 112 185 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02849 Trre-Chr6 25513173 25515565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02849 108 290 Eukaryotic Initiation Factors Gene Family AT1G22760 32.632 3.78e-22 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02849 - - tpra:123897635 460.685