Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02829 ATGCCGCTGGATTCCTCTGAACAAGATGATGATCCCGAAATTGAGTTCTCTGAAATTGATCCTACCGGGAGATATGGTCGGTACAAGGAAGTTTTAGGAAAGGGGGCTTTTAAGAAAGTATATCGAGCTTTTGATGAGCTGGAAGGAATTGAAGTGGCTTGGAATCAGGTTAAGGTGTCTGATCTATTGCGTAATTCTGAAGATTTGGAGCGACTTTATTCTGAAGTTCATTTGCTCAAGACTTTGAAGCATAAGAATATTATTAAATTTTATAGTTCATGGGTTGACACAAAGAATGAGAATATTAACTTTATAACTGAAATTTTCACATCTGGAACATTGCGCCAATATCGGAAGAAACATAAGCATGTTGATTTGAGAGCTTTGAAGAAATGGTCTAGGCAGATTTTGGAGGGTCTTTCATATCTTCATAGTCATAATCCACCGGTTATTCACCGAGACCTTAAGTGTGACAACATTTTTGTCAATGGGAATCAAGGGGAGGTGAAAATTGGTGATTTAGGATTGGCAGCCATTCTTCAACAGGCCAACTCAGCTCACAGTGTTATAGGTACTCCGGAGTTTATGGCCCCGGAACTTTATGAAGAGGAGTACAATGAGCTTGTTGACATCTATGCTTTTGGCATGTGCTTGCTAGAATTGGTAACTGTTGAGTACCCGTATGTTGAATGTGCCAATGCTGCTCAAATATACAAGAAAGTGACATCTGGAATAAAGCCAGCATCATTGGCAAAAGTAAATGATCCTGAAGTTAAAGCATTTATAGAAAAGTGTACTGCTCATGTATCAGAACGGTTGCCTGCAAAAGCTCTCTTGATGGATCCTTTCCTTCAGTCAGATTGGGATGGTGAAAGCGTTGGTCGATCTTCGAGATCTAGAAACCAACATTCAGGAAATAACTCTGATAATCAATCCATTGGAAAAAGTGCCAAGGATAATTCTGTTGAGACAAGTAGGGAATTCACGGTGGAAGGCCAGAGGAGAGATGTTAATACTATATTTTTAAAGTTGAGAATTGCAGATTCCTCAGGGCATATTCGAAATATCCACTTCCCTTTCAATATTGGAGCAGATACTTCATTCTCTGTTGCTAGTGAAATGGTTGAAGAATTGGAGCTTACTGATCAAGATGTTTCGACTATTGCTATGACGATTGACTCAGAAATTCGATACCACATTCCTAGTTGGAGTCCCAGTGAAACTCCCGACAATAATTCTTTTCAAGCTTCAGGCCAAACCCCTGAAACTATGCACGTGGCATCTCCTATGGGAAATGAATCTCCTGCCAGCCTTGCTTTAGAAATATTACCTTCAGGTCGTAAGTACTGGTCAGATTCACCTAAAGGTGTTGGTGCAAGCTCTCCATCTCTGCATGGTGCTTCAAACTTGTCTTATGAAGTGGATGCGATTGCTGAGGAAGCAAGTTTTTTTGCAAATAGTGTGGAGAAGGAATGTGATGGGACCATTGATTCTCCTTTCAATAAAAGAAGTATTACATCGGAATATTTTGATGCAACTGGTGATAAGTCCTCTCAAGAAGAAATATCTGTTAGTTTAAAAGATGTTGAAATAGAAAACATTAATAAAATAGCAACAAAGTTAGAGACTATGTTGGTTATGCAACGAGAGGAGTTGGATGAATTGAAGAGGAAGCACAAATTAGCTGTCTCGGATTTTTTGAATGAATTTTCTCCAGAAGTTACTCAACATGTTCTAAACACATGCAACATGCAGATGCCTGACGGTGAAATGTAG 1776 0.393 MPLDSSEQDDDPEIEFSEIDPTGRYGRYKEVLGKGAFKKVYRAFDELEGIEVAWNQVKVSDLLRNSEDLERLYSEVHLLKTLKHKNIIKFYSSWVDTKNENINFITEIFTSGTLRQYRKKHKHVDLRALKKWSRQILEGLSYLHSHNPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILQQANSAHSVIGTPEFMAPELYEEEYNELVDIYAFGMCLLELVTVEYPYVECANAAQIYKKVTSGIKPASLAKVNDPEVKAFIEKCTAHVSERLPAKALLMDPFLQSDWDGESVGRSSRSRNQHSGNNSDNQSIGKSAKDNSVETSREFTVEGQRRDVNTIFLKLRIADSSGHIRNIHFPFNIGADTSFSVASEMVEELELTDQDVSTIAMTIDSEIRYHIPSWSPSETPDNNSFQASGQTPETMHVASPMGNESPASLALEILPSGRKYWSDSPKGVGASSPSLHGASNLSYEVDAIAEEASFFANSVEKECDGTIDSPFNKRSITSEYFDATGDKSSQEEISVSLKDVEIENINKIATKLETMLVMQREELDELKRKHKLAVSDFLNEFSPEVTQHVLNTCNMQMPDGEM 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02829 591 Gene3D Transferase(Phosphotransferase) domain 1 109 290 - -
Trre6g02829 591 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 342 396 IPR024678 GO:0004674|GO:0005524
Trre6g02829 591 MobiDBLite consensus disorder prediction 403 431 - -
Trre6g02829 591 MobiDBLite consensus disorder prediction 290 319 - -
Trre6g02829 591 SMART serkin_6 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02829 591 Gene3D Phosphorylase Kinase; domain 1 10 107 - -
Trre6g02829 591 Pfam Protein kinase domain 29 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02829 591 Gene3D - 338 427 - -
Trre6g02829 591 FunFam Probable serine/threonine-protein kinase WNK1 10 107 - -
Trre6g02829 591 CDD STKc_WNK 24 284 - -
Trre6g02829 591 MobiDBLite consensus disorder prediction 404 427 - -
Trre6g02829 591 MobiDBLite consensus disorder prediction 290 330 - -
Trre6g02829 591 FunFam probable serine/threonine-protein kinase WNK9 109 289 - -
Trre6g02829 591 SUPERFAMILY Protein kinase-like (PK-like) 28 285 IPR011009 -
Trre6g02829 591 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Trre6g02829 591 Coils Coil 538 558 - -
Trre6g02829 591 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 9 506 - -
Trre6g02829 591 ProSiteProfiles Protein kinase domain profile. 26 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02829 Trre-Chr6 25408370 25412449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02829 102 590 MAP Kinase Kinase Kinase AT3G48260 55.397 6.05e-172 493
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK WNK_NRBP Trre6g02829 Pkinase 2.4e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02829 K08867 - gmx:100301899 828.165