Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02826 ATGGCTGCAATTTCAATTTCTTCATCTACTTCCGCTTCCAAACTTAAACTCTCCCCAACTCACCCACCAAACTCTCACACCTTCATCGCTTCCGCTTCCATTTCCAAAAACACCACAAACTCCCGTTCTTCCTCCACAAACCCCAAACTAACCCTAACTCGTCTCACTTCCTCATTCCTTAACCCTTCCACAATCCTCCACCTCACTCCCACTTCCAAACCCAATCACCACCGTCCATCTTTCACCGTCCGTGCCGCACGTGGCAAATTCGAGCGCAAAAAACCTCATCTCAACATCGGTACAATTGGCCACGTCGACCACGGTAAAACAACTTTAACCGCTGCTCTTACTATGGCTCTTGCTTCTCTCGGTAACAGCGCTCCTAAAAAATACGATGAAATTGACGCTGCTCCTGAAGAGCGTGCTCGTGGTATTACTATTAATACTGCTACTGTTGAATATGAAACTGAAACTCGTCACTATGCTCATGTTGATTGCCCTGGTCACGCTGATTATGTTAAGAATATGATTACCGGTGCTGCTCAAATGGACGGCGCTATCCTTGTCGTCTCCGGTGCCGATGGTCCCATGCCTCAAACCAAAGAACATATTCTTCTCGCCAAACAGGTTGGTGTTCCGAGTGTGGTTGTGTTTTTGAACAAGCAGGATCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGACCTTGAAGTTCGGGAGCTTCTCTCATCTTATGAGTTTCCTGGAGATGACATTCCAATTGTTTCTGGTTCTGCGCTCTTGGCTTTAGAAGCGTTGATGGCAAACCCTACACTTAAACGTGGTGATAACAAGTGGGTGGATAAGATTTACCAGCTCATGGATGAAGTTGACAAATACATACCAATCCCTCAACGTCAAACGGATCTCCCCTTTTTGCTTGCCATTGAGGATGTGTTTTCAATCACTGGTCGTGGAACAGTTGCCACCGGTAGAATTGAAAGAGGGCTTGTTAAAGTTGGTGATGTAGTTGACCTTGTTGGTTTGAGGAACACAAGGAGCACAACAGTGACGGGAGTAGAAATGTTCCAGAAGATTTTGGATGATGCTATGGCCGGCGACAATGTGGGGTTGTTGCTGAGAGGTGTCCAGAAGGATGATATTCAGAGAGGAATGGTTTTGGCTAAGCCTGGAACTATTACTCCTCACTCTAAGTTTAGTGCTATTGTGTATGTTTTAAAGAAGGAAGAAGGTGGAAGACACTCACCCTTCTTCGCTGGTTATAGGCCTCAGTTTTATATGAGGACTACCGATGTTACCGGAAAAGTTACTTCTATCATGAATGATAAAGATGAGGAGTCAAAGATGGTGATGCCCGGTGATCGTGTTAAGATGGTGGTTGAGCTAATTGTTCCCGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACCGTTGGAGCCGGTGTTATCGGAGCTATCATTGAGTGA 1482 0.4561 MAAISISSSTSASKLKLSPTHPPNSHTFIASASISKNTTNSRSSSTNPKLTLTRLTSSFLNPSTILHLTPTSKPNHHRPSFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVDLEVRELLSSYEFPGDDIPIVSGSALLALEALMANPTLKRGDNKWVDKIYQLMDEVDKYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRIERGLVKVGDVVDLVGLRNTRSTTVTGVEMFQKILDDAMAGDNVGLLLRGVQKDDIQRGMVLAKPGTITPHSKFSAIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02826 493 CDD EFTU_III 394 488 - -
Trre6g02826 493 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 313 IPR027417 -
Trre6g02826 493 FunFam Elongation factor Tu 85 297 - -
Trre6g02826 493 NCBIfam elongation factor Tu 86 493 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre6g02826 493 PANTHER ELONGATION FACTOR TU-RELATED 66 492 - -
Trre6g02826 493 Pfam Elongation factor Tu domain 2 319 387 IPR004161 GO:0005525
Trre6g02826 493 MobiDBLite consensus disorder prediction 1 27 - -
Trre6g02826 493 PRINTS GTP-binding elongation factor signature 142 150 IPR000795 GO:0003924|GO:0005525
Trre6g02826 493 PRINTS GTP-binding elongation factor signature 178 189 IPR000795 GO:0003924|GO:0005525
Trre6g02826 493 PRINTS GTP-binding elongation factor signature 162 172 IPR000795 GO:0003924|GO:0005525
Trre6g02826 493 PRINTS GTP-binding elongation factor signature 98 111 IPR000795 GO:0003924|GO:0005525
Trre6g02826 493 PRINTS GTP-binding elongation factor signature 215 224 IPR000795 GO:0003924|GO:0005525
Trre6g02826 493 Gene3D Translation factors 432 492 - -
Trre6g02826 493 Gene3D Translation factors 300 428 - -
Trre6g02826 493 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 392 492 IPR009001 -
Trre6g02826 493 SUPERFAMILY Translation proteins 299 395 IPR009000 -
Trre6g02826 493 CDD EF_Tu 95 297 IPR041709 -
Trre6g02826 493 Hamap Elongation factor Tu [tuf]. 85 493 IPR004541 GO:0003746|GO:0005525|GO:0006414
Trre6g02826 493 FunFam Elongation factor Tu 432 492 - -
Trre6g02826 493 Pfam Elongation factor Tu GTP binding domain 94 295 IPR000795 GO:0003924|GO:0005525
Trre6g02826 493 Pfam Elongation factor Tu C-terminal domain 392 491 IPR004160 -
Trre6g02826 493 NCBIfam small GTP-binding protein domain 98 230 IPR005225 GO:0005525
Trre6g02826 493 FunFam Elongation factor Tu 300 428 - -
Trre6g02826 493 Gene3D - 86 297 IPR027417 -
Trre6g02826 493 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 94 298 IPR000795 GO:0003924|GO:0005525
Trre6g02826 493 CDD EFTU_II 305 391 IPR033720 -
Trre6g02826 493 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 135 150 IPR031157 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02826 Trre-Chr6 25392432 25394313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02826 92 491 Eukaryotic Initiation Factors Gene Family AT5G60390 29.730 2.91e-45 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02826 K02358 - jre:108984280 786.563