Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02824 ATGAGTTCTCCTAGTCCTATGGAGACCGAGCAAAACCCTACCACCGATCTAAACGCCGCCGCTTCACAACACTCACCTCCACCTCCTCCTCCTCCTCCTCCTCTTCCGCCGGAGGATAAAGTTCTTGTCCCTATTGAGGTTTGCTTAAAACCTTCCAGCACTGCTTCCATCCACGATGTCCGTTCAGCAGTTGAGGGGATGCTTGAAAAGAGGAGTTTGAGCTATAATGGTGGACCAATTCCCATTCCTCTTGATGAACCTTTTCTTGCCGATAACGTGCAAAGAATTTGTGTATGTGATACAGGTGAAGGGATGCAAAATGACAATGTTCTTTTGTTCTGGCAAGTCAAGCCTGTTGTACATGTCTTTCAGCTTAGTGAGGAAGGACCGTGTGAGGATATCAGCTCTGATGGCCAGTCATCTAGCTTCAATGAATGGATTCTTCCTGCAAAAGAATTTGATGGCATGTGGGAAAGCCTGATATATGAATCTGGTCTAAAGCAAAGGTTGTTGCGGTATGCAGCGAGTGCTTTGCTCTTCACTGAAAAGGCCGTTGATCCATTCCTTGTTTCATGGAACCGCATAATTCTTTTGCATGGACCCCCTGGGACTGGAAAGACGTCCTTATGTAAAGCATTAGCTCAGAAACTATCAATTCGATTCAATTCAAGATACCCACAGGCCCAGCTTATTGAAGTGAATGCACATTCTTTGTTCAGTAAATGGTTCTCCGAAAGCGGCAAGCTGGTAGCAAAACTTTTCCAGAAGATTCAAGAAATGGTTGAGGAAGAAAGCAATTTGGTATTTGTTTTGATCGATGAAGTCGAAAGCCTTGCTGCTGCTAGAAAAGCTGCTTTGTCCGGTTCTGAACCTTCAGATTCCATTCGGGTTGTCAATGCATTACTAACTCAGATGGATAAGTTGAAATCATCTCCAAATGTGATCATTCTAACCACATCCAACATTACTGCTGCTATCGATATTGCTTTTGTTGACCGAGCTGATATCAAAGCATATGTTGGTCCACCAACACTTCAAGCTCGGTATGAAATATTAAGGTCTTGCTTGCAGGAACTCATGCGTTCAGGGATATTAACTAGTTTTGAGGATTGTAAGAATATCGTGCTTCCAAATTATGCTAGTGCAAAACAGAGGATGAATACACCAGATTTTCACGAGCCTACTACATCCGCGCAACTGTGCAAGCAACTAGTTGAAACTGCAGAGGCATGTGAGGGAATGAGCGGAAGGTCTCTCAGAAAGCTTCCATTTTTGGCACATGCTGCACTTACAAATCCTTTTGATTGCAACCCTATCAAGTTCTTATGTACAATGATAGAAACTGCAAAGAGGGAGCGTTCTGAGCTTCCTGATTAA 1377 0.4357 MSSPSPMETEQNPTTDLNAAASQHSPPPPPPPPPLPPEDKVLVPIEVCLKPSSTASIHDVRSAVEGMLEKRSLSYNGGPIPIPLDEPFLADNVQRICVCDTGEGMQNDNVLLFWQVKPVVHVFQLSEEGPCEDISSDGQSSSFNEWILPAKEFDGMWESLIYESGLKQRLLRYAASALLFTEKAVDPFLVSWNRIILLHGPPGTGKTSLCKALAQKLSIRFNSRYPQAQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEESNLVFVLIDEVESLAAARKAALSGSEPSDSIRVVNALLTQMDKLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLQARYEILRSCLQELMRSGILTSFEDCKNIVLPNYASAKQRMNTPDFHEPTTSAQLCKQLVETAEACEGMSGRSLRKLPFLAHAALTNPFDCNPIKFLCTMIETAKRERSELPD 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02824 458 SMART AAA_5 192 344 IPR003593 GO:0016887
Trre6g02824 458 MobiDBLite consensus disorder prediction 1 22 - -
Trre6g02824 458 ProSitePatterns AAA-protein family signature. 314 333 IPR003960 GO:0005524|GO:0016887
Trre6g02824 458 MobiDBLite consensus disorder prediction 23 40 - -
Trre6g02824 458 FunFam pachytene checkpoint protein 2 homolog 136 358 - -
Trre6g02824 458 Gene3D - 135 359 IPR027417 -
Trre6g02824 458 CDD RecA-like_Pch2-like 142 340 - -
Trre6g02824 458 PANTHER PACHYTENE CHECKPOINT PROTEIN 2 36 455 IPR044539 -
Trre6g02824 458 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 196 214 IPR001270 GO:0005524
Trre6g02824 458 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 310 324 IPR001270 GO:0005524
Trre6g02824 458 Pfam ATPase family associated with various cellular activities (AAA) 196 341 IPR003959 GO:0005524|GO:0016887
Trre6g02824 458 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 148 425 IPR027417 -
Trre6g02824 458 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02824 Trre-Chr6 25370055 25375522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02824 196 362 Calmodulin-binding Proteins AT3G56690 30.178 3.78e-13 70.1