Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02816 ATGATGTGTTGCTGTGTTTCTTTTGATGAAATTCAGAAATCAGAGTGGAAGTTGCATTGTCTTGAATGTGAAGCACTCTCAAGGCTAGACAACCTTAAGAGAAAATCTGTCACACCATCGATACGGTTGATGCTTAAACTTTATATTCGAAGGAAGTTGCAAGATGAGAAGATCATTCCAACCACTGCTATCGACAACTACAAGTTAGTGGAGGCATTAGTGGCTCACATGTCTGACATCAAAGAGGAGCAGCTGGTGTTGTATGCACAGATGGCTAATCTTGTACACTTAATACTACAGTGGCCTGAAATCAATATAAAAGAGATTGCAGAAATTTTTTCCAAGTTTGCATGTAATGCGCATACCATTTGTGACAGTGAGTTGAGACCTTTGGGAACAGGATTGTATCCTGTCGTTTCCATTATCAATCACAGCTGCTTGCCCAATTCAGTGTTGGTTTTTGAAGGAAGGGTAGCATCAGTACGTGCTTTGCAACATGTGCCCAAAGGGACTGAGGTATTGATAAGTTATATAGAGACAGCTGGAAGCACCGTGACTCGACAAAAGGCTCTCAACGAGCAGTACTTATTCACTTGTGTTTGTCCCCGCTGTTCTAAAGTGGGTCAGTATGAAGATGTTCCAGAAAATGCAATTCTAGAAGGATACAGATGCAAAAATGAAACATGTGATGGTTTCTTGCTCCGCACAACTGACGGAAAAGAATTTCAATGCGAAGAATGTGGGTTAGTTAGAGACAAGGAAGAGATAAAGCAAATTGCAACTGAAATTAAATTGCTATTAGAAGAAGCTTCTAAGCCTTCTTCCAGTGACAATTATCAAGATGCTATTTCCATATATAAAATGATTGAGAAACTGCAAACAAAACTATATCATCCTTTCTCAATCAATTTGATGCAAACACGAGAGACAATTTTGAAGTCACTAATGAAGCTGGAACATTGGAGGGAAGCTTTAGCATATTGCAAATTGACCATACCAATCTATCAAAGAGTGTATCCTGCTGTTCACCCTCTGCTTGGATTGCAGTATTATACTTGTGGAAAACTTGAATGGTATCTTGGAGACACAGAAGAAGCTGTTAAATCATTGACGAAAGCTGTGGATATACTAAGGATTACTCATGGCACAAACACTCCTTTTGTGAAGGAACTCTTGATGATGTTGGAGGAAGCTCGTGCAGAAGCGTCTTACAAATTGTCGTCGAAAGAGGAGTAG 1236 0.3964 MMCCCVSFDEIQKSEWKLHCLECEALSRLDNLKRKSVTPSIRLMLKLYIRRKLQDEKIIPTTAIDNYKLVEALVAHMSDIKEEQLVLYAQMANLVHLILQWPEINIKEIAEIFSKFACNAHTICDSELRPLGTGLYPVVSIINHSCLPNSVLVFEGRVASVRALQHVPKGTEVLISYIETAGSTVTRQKALNEQYLFTCVCPRCSKVGQYEDVPENAILEGYRCKNETCDGFLLRTTDGKEFQCEECGLVRDKEEIKQIATEIKLLLEEASKPSSSDNYQDAISIYKMIEKLQTKLYHPFSINLMQTRETILKSLMKLEHWREALAYCKLTIPIYQRVYPAVHPLLGLQYYTCGKLEWYLGDTEEAVKSLTKAVDILRITHGTNTPFVKELLMMLEEARAEASYKLSSKEE 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02816 411 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SMYD 4 397 - -
Trre6g02816 411 Coils Coil 249 269 - -
Trre6g02816 411 Pfam SET domain 110 177 IPR001214 GO:0005515
Trre6g02816 411 Gene3D SET domain 95 177 IPR046341 -
Trre6g02816 411 SUPERFAMILY TPR-like 275 381 IPR011990 GO:0005515
Trre6g02816 411 SUPERFAMILY SET domain 115 205 IPR046341 -
Trre6g02816 411 ProSiteProfiles SET domain profile. 45 178 IPR001214 GO:0005515
Trre6g02816 411 Gene3D Tetratricopeptide repeat domain 182 411 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02816 Trre-Chr6 25316726 25320609 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Trre6g02816 SET 1e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02816 K11426 - gmx:100789518 672.159