Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02805 ATGCACCATCACCGAATCCTCTTCGACAAGTACCATCCAGGTTACTTCGGTAAGGATAAAGCTGCTAAGGAGAAGAAAGCACCTGTTATTGATGTTACTCAGTTTGGTTACTTTAAGCTTTTGGGAAAAGGTGTTTTGCCTCAGAATCAGCCTTTTGTTGTCAAGACTAAGCTCATTTCTAAGATTGCTGAGAAGAAGATTAAAGAGGCTGGTGGTGCTGTTGTTCTCACTGCTTAG 237 0.4177 MHHHRILFDKYHPGYFGKDKAAKEKKAPVIDVTQFGYFKLLGKGVLPQNQPFVVKTKLISKIAEKKIKEAGGAVVLTA 78
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02805 78 Gene3D - 8 78 - -
Trre6g02805 78 PANTHER 60S RIBOSOMAL PROTEIN L27A 21 78 - -
Trre6g02805 78 ProSitePatterns Ribosomal protein L15 signature. 39 71 IPR001196 GO:0003735|GO:0005840|GO:0006412
Trre6g02805 78 Coils Coil 78 78 - -
Trre6g02805 78 SUPERFAMILY Ribosomal proteins L15p and L18e 17 77 IPR036227 -
Trre6g02805 78 Pfam Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 24 75 IPR021131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02805 Trre-Chr6 25215749 25216081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02805 1 78 Cytoplasmic Ribosomal Protein Gene Family AT1G23290 58.716 2.18e-33 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02805 K02900 - gmx:100802235 120.938