Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02786 ATGGGTCGTCATTCTTCTTTAAAGCAAAAACTAAGAAGAGGTTTATGGTCCCCTGAAGAAGATGAGAAACTATTCAATTACATAACCATTTTTGGTGTTGGATGTTGGAGTTCAGTTCCCAAACTAGCTGGGTTGGAAAGGTGTGGAAAGAGTTGCAGATTGAGATGGATAAACTACTTGAGACCTGATTTGAAGAGAGGAATGTTCTCTCAACAAGAGGAACATCTTATTATCAGTCTTCATGAAGTACTTGGAAATAGGTGGGCACAAATTGCGGCACAATTACCTGGAAGAACAGATAATGAGATAAAGAATTTCTGGAATTCGAGTTTGAAGAAAAAGCTAATGAAGCAAGGGATTGATCCAACTACACATAAGTCATTAATTAATCCAGAATATCTTATCAAAGAAGAGAAGAAAATAACAGAAAAACCATCAATGCTAATGCCACAGTCTCAAACGATTTTAACTACTCAAGAATCAGAAACACTTCTGAATTGTCAGTATAATATTGGTGGATTAGCTTTAACAGAAGCTTCAAGAAAATTTCTCATGAGTATGCCAGCATTGGATCCATTGTGCTACAATTTAAGTGCGAGCAATTATTATCAGCCAAACCAATTTGGAACAAATATTTCAAACTATTTCTTCTCTTCAATGCCTTGTTTAAATAATTCAGATCAGGTTTCAGACAATAATAACTCAGTTGTTTCTGAATTAAGTTCTCTTTTGATGAATGAAAATTCAAGTAATAGTACTTCAACCATGATTGAAAATCATGAAGCTGGGTTAATATCATGGGAAGGTGAGAACAATAAGTTGTTGAATTTGGATCCTTTGTTGCAGTTTGAAGTAAATGCAATAAAATGTGAAGAGTTCATCATGAAGAAAAGTTCATCCCAAGAACAAGAAGGACAATTGCTGACTCATAATTCAAATGATTTCAGTACATATCCTATAACGTCACTGTCAGAAGATCTAAGTACTCAAACTAATTTTGATGTATTTTACCATTTATGA 1020 0.3392 MGRHSSLKQKLRRGLWSPEEDEKLFNYITIFGVGCWSSVPKLAGLERCGKSCRLRWINYLRPDLKRGMFSQQEEHLIISLHEVLGNRWAQIAAQLPGRTDNEIKNFWNSSLKKKLMKQGIDPTTHKSLINPEYLIKEEKKITEKPSMLMPQSQTILTTQESETLLNCQYNIGGLALTEASRKFLMSMPALDPLCYNLSASNYYQPNQFGTNISNYFFSSMPCLNNSDQVSDNNNSVVSELSSLLMNENSSNSTSTMIENHEAGLISWEGENNKLLNLDPLLQFEVNAIKCEEFIMKKSSSQEQEGQLLTHNSNDFSTYPITSLSEDLSTQTNFDVFYHL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02786 339 SUPERFAMILY Homeodomain-like 11 107 IPR009057 -
Trre6g02786 339 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Trre6g02786 339 Gene3D - 68 144 - -
Trre6g02786 339 Pfam Myb-like DNA-binding domain 66 109 IPR001005 -
Trre6g02786 339 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Trre6g02786 339 PANTHER MYB DOMAIN PROTEIN 55 1 299 - -
Trre6g02786 339 FunFam MYB transcription factor 67 128 - -
Trre6g02786 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Trre6g02786 339 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Trre6g02786 339 CDD SANT 69 111 IPR001005 -
Trre6g02786 339 CDD SANT 16 60 IPR001005 -
Trre6g02786 339 Gene3D - 10 66 - -
Trre6g02786 339 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Trre6g02786 339 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 35 - -
Trre6g02786 339 SMART sant 12 62 IPR001005 -
Trre6g02786 339 SMART sant 65 113 IPR001005 -
Trre6g02786 339 FunFam MYB transcription factor 10 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02786 Trre-Chr6 25090772 25092094 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02786 1 144 MYB Transcription Factor Family AT4G01680 75.172 1.30e-73 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g02786 Myb_DNA-binding 4.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02786 K09422 - gmx:100811140 350.903