Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02781 ATGAGCCAGCCAACAATTGAATGTTATATTGTTGTGGTACAAATAATTGAGTTAGTAAAGGACTTATTTGGTAAATTAGCCAACAATGGTATGATCTCACAAATTCTTCTCTTGGAAGTCGTTTTGAGAAGGTACAAGAACAGCTTCAAAAGCTCAGGGAAAACAATGGCATCATCAAGCTCATACAATTCACCATGTGCAGCCTGCAAATTCCTTCGTCGAAAATGCATGCCAGGTTGCATTTTCGCGCCATACTTTCCACCAGAAGAGCCGCAAAAATTCGCAAACGTTCACAAGATCTTTGGCGCAAGCAACGTGACAAAGATCCTCAATGAACTCCTCCCTCACCAGAGAGAAGATGCAGTGAATTCACTTGCTTATGAAGCGGAAGCGCGCGTGAGGGATCCGGTTTACGGCTGTGTTGGTGCTATCTCTTTCCTTCAGAGACAAGTTCAAAGGCTTCAAAAAGAACTTGATTCTGCTAATGCCGATCTTCTTCGCTTTGCTTACAGTGATTCGTCTCTTCCACCTCTTCCTCCTCTTGTTGTTCCGGCTTCATTTCATCATCATCATCATCATCAACAATTAACACCTCAGAGACAATTACAATTTAGTTCAAGATTTGGTAATGGTGGTAATGTTGATGCAAGTGGTTTTTACTCTTTTCCTTATGCTATTCCATGGAATGATACCTCTTCTGATGATTTAAGTGGAGGTGTAGGAGGAAGAGGAGGAGGTGTATGA 744 0.418 MSQPTIECYIVVVQIIELVKDLFGKLANNGMISQILLLEVVLRRYKNSFKSSGKTMASSSSYNSPCAACKFLRRKCMPGCIFAPYFPPEEPQKFANVHKIFGASNVTKILNELLPHQREDAVNSLAYEAEARVRDPVYGCVGAISFLQRQVQRLQKELDSANADLLRFAYSDSSLPPLPPLVVPASFHHHHHHQQLTPQRQLQFSSRFGNGGNVDASGFYSFPYAIPWNDTSSDDLSGGVGGRGGGV 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02781 247 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 63 194 - -
Trre6g02781 247 ProSiteProfiles LOB domain profile. 64 165 IPR004883 -
Trre6g02781 247 Coils Coil 144 164 - -
Trre6g02781 247 Pfam Lateral organ boundaries (LOB) domain 65 162 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02781 Trre-Chr6 24949655 24953581 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02781 56 174 AS2 family AT5G63090 89.167 3.36e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Trre6g02781 LOB 5.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02781 - - gmx:100803667 270.396