Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02768 ATGAACATAAAGGGGAAAATAGAGAAGGTGAATGGTAAGGAACTAAGTTACAGTGAATTTGTTGAAAGATATATGGAGAAGAACAAGCCAGTAATTCTCACTGGATTAATGGACCATCATTGGAAAGCTTCCACTGATTGGGTCACCCCAAAGTCTCAGCCTAATTTTCAATTTTTTTTCAATCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTTGGTGATCAAAAAAGGGAGGAGATGTTGGTCTCTGATTTCGTAGGACATTGCCTTCAGATTGAGGGTTCTGCAGTTCCATGCAGTAATGAAAATGGTATAAGTAATGGTGATTCTTTATCTGTACCTTATTTGAAGGATTGGCATTTTGTGAAGGAATATCCAGATTATGTAGCATACATCACTCCAATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGACAACTTCAGAATGAATACTTATTCTGACAGTTCCCCGCAAAATACGGAAATTTGTTGCTCTGACTATCGTTTTGTTTACATGGGAATTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTATGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAACATCATCTTGTGTTTGACAGGAATGTGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGATTCAAAATATCCCGGTTTTAAAAAGGCTATCTGGTTAGAGTGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGAGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAATGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAACTTTTATGACTTCTTCACTTTCATTTCATACTTCTCCTTGGCCAACTTGGTGCTGCTCTGCTACATAAACGGAAAAGATGGAAGTACTACTGGAAGTTCGTCAAGAGTAGCTCAACATTTATATTTGAATATTGGGTCTATTAGGAAGGTCGCATCAGAGATGAAAAACTTGCATGCTCTAGAAGGGAATCATGATTGCATTGTGGATATGATCAAAACATATGAAGATCCTAGGTTTTCCAAATTCTGCATACAAGTGGGAAAAACATATTTAACAATACACGAACAATCCAATTTGTTCTCTGATTTTGAGAGTGCTTCAACGGTTGAGTTGGCGGACCTCGGTGTTTTTAAAGCACACACTTCTTCCCAGGTTTACACACCAGAAGACCTCATCAAATTTATAGACACTGCTGTTGCAGAACTGGGCGACATTTTCATCGAGTCGTCTGTACTGCGTGTTGCTTGA 1464 0.3832 MNIKGKIEKVNGKELSYSEFVERYMEKNKPVILTGLMDHHWKASTDWVTPKSQPNFQFFFNHFGSSKVQVADCDTRDFGDQKREEMLVSDFVGHCLQIEGSAVPCSNENGISNGDSLSVPYLKDWHFVKEYPDYVAYITPMFFCDDWLNLYLDNFRMNTYSDSSPQNTEICCSDYRFVYMGIKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQHHLVFDRNVKSCVYNIFDEVSDSKYPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFECLCQRNLAANTGMNFYDFFTFISYFSLANLVLLCYINGKDGSTTGSSSRVAQHLYLNIGSIRKVASEMKNLHALEGNHDCIVDMIKTYEDPRFSKFCIQVGKTYLTIHEQSNLFSDFESASTVELADLGVFKAHTSSQVYTPEDLIKFIDTAVAELGDIFIESSVLRVA 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02768 487 Gene3D Cupin 1 284 - -
Trre6g02768 487 ProSiteProfiles JmjC domain profile. 145 300 IPR003347 -
Trre6g02768 487 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 8 337 - -
Trre6g02768 487 SMART cupin_9 120 300 IPR003347 -
Trre6g02768 487 Pfam Cupin-like domain 19 283 IPR041667 -
Trre6g02768 487 SUPERFAMILY Clavaminate synthase-like 6 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02768 Trre-Chr6 24720623 24724471 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02768 5 292 Glycosyltransferase AT1G78280 25.914 4.76e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre6g02768 Cupin_8 5.5e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02768 - - gsj:114409851 805.823