Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02767 ATGGCTCTGAACATGAACATAAAGGGGAAAATAGAGAAGGTGAATGGTAAGGAACTAAGTTACAGTGAATTTGTTGAAAGATATATGGAGAAGAACAAGCCAGTAATTCTCACTGGATTAATGGACCATCATTGGAAAGCTTCCACTGATTGGGTCACCCCAAAGTCTCAGCCTAATTTTCAATTTTTTTTCAATCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTTGGTGATCAAAAAAGGGAGGAGATGTTGGTCTCTGATTTCGTAGGACATTGCCTTCAGATTGAGGGTTCTGCAGTTCCATGCAGTAATGAAAATGGTATAAGTAATGGTGATTCTTTATCTGTACCTTATTTGAAGGATTGGCATTTTGTGAAGGAATATCCAGATTATGTAGCATACATCACTCCAATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGACAACTTCAGAATGAATACTTATTCTGACAGTTCCCCGCAAAATACGGAAATTTGTTGCTCTGACTATCGTTTTGTTTACATGGGAATTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTATGTGGAAAGAAGAGATGGTTTTTTCTAGATCCTTCCCAACATCATCTTGTGTTTGACAGGAATGTGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGATTCAAAATATCCCGGTTTTAAAAAGGCTATCTGGTTAGAGTGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGAGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAATGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAACTTTTATGACTTCTTCACTTTCATTTCATACTTCTCCTTGGCCAACTTGGTGCTGCTCTGCTACATAAACGGAAAAGATGGAAGTACTACTGGAAGTTCGTCAAGAGTAGCTCAACATTTATATTTGAATATTGGGTCTATTAGGAAGGTCGCATCAGAGATGAAAAACTTGCATGCTCTAGAAGGGAATCATGATTGCATTGTGGATATGATCAAAACATATGAAGATCCTAGGTTTTCCAAATTCTGCATACAAGTGGGAAAAACATATTTAACAATACACGAACAATCCAATTTGTTCTCTGATTTTGAGAGTGCTTCAACGGTTGAGTTGGCGGACCTCGGTGTTTTTAAAGCACACACTTCTTCCCAGGTTTACACACCAGAAGACCTCATCAAATTTATAGACACTGCTGTTGCAGAACTGGGCGACATTTTCATCGAGTCGTCTGTACTGCGTGTTGCTTGA 1476 0.3841 MALNMNIKGKIEKVNGKELSYSEFVERYMEKNKPVILTGLMDHHWKASTDWVTPKSQPNFQFFFNHFGSSKVQVADCDTRDFGDQKREEMLVSDFVGHCLQIEGSAVPCSNENGISNGDSLSVPYLKDWHFVKEYPDYVAYITPMFFCDDWLNLYLDNFRMNTYSDSSPQNTEICCSDYRFVYMGIKGSWTPLHADVFRSYSWSANVCGKKRWFFLDPSQHHLVFDRNVKSCVYNIFDEVSDSKYPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFECLCQRNLAANTGMNFYDFFTFISYFSLANLVLLCYINGKDGSTTGSSSRVAQHLYLNIGSIRKVASEMKNLHALEGNHDCIVDMIKTYEDPRFSKFCIQVGKTYLTIHEQSNLFSDFESASTVELADLGVFKAHTSSQVYTPEDLIKFIDTAVAELGDIFIESSVLRVA 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02767 491 SMART cupin_9 124 304 IPR003347 -
Trre6g02767 491 SUPERFAMILY Clavaminate synthase-like 8 316 - -
Trre6g02767 491 Pfam Cupin-like domain 23 287 IPR041667 -
Trre6g02767 491 ProSiteProfiles JmjC domain profile. 149 304 IPR003347 -
Trre6g02767 491 Gene3D Cupin 2 288 - -
Trre6g02767 491 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 5 341 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02767 Trre-Chr6 24720623 24724483 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02767 9 296 Glycosyltransferase AT1G78280 25.914 4.99e-14 73.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre6g02767 Cupin_8 5.6e-23 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02767 - - gsj:114409851 805.823