Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02766 ATGGCTCTGAACATGAACATAAAGGGGAAAATAGAGAAGGTGAATGGTAAGGAACTAAGTTACAGTGAATTTGTTGAAAGATATATGGAGAAGAACAAGCCAGTAATTCTCACTGGATTAATGGACCATCATTGGAAAGCTTCCACTGATTGGGTCACCCCAAAGTCTCAGCCTAATTTTCAATTTTTTTTCAATCATTTTGGTTCCTCCAAAGTTCAGGTTGCAGATTGTGATACTAGAGATTTTGGTGATCAAAAAAGGGAGGAGATGTTGGTCTCTGATTTCGTAGGACATTGCCTTCAGATTGAGGGTTCTGCAGTTCCATGCAGTAATGAAAATGGTATAAGTAATGGTGATTCTTTATCTGTACCTTATTTGAAGGATTGGCATTTTGTGAAGGAATATCCAGATTATGTAGCATACATCACTCCAATGTTCTTTTGTGATGATTGGCTCAACTTGTATCTCGACAACTTCAGAATGAATACTTATTCTGACAGTTCCCCGCAAAATACGGAAATTTGTTGCTCTGACTATCGTTTTGTTTACATGGGAATTAAAGGATCTTGGACTCCTCTACATGCTGATGTTTTCAGGTCGTATAGCTGGTCAGCAAATGTATGTGGAAAGAAGAGATGGAATGTGAAAAGCTGTGTATATAATATCTTTGATGAAGTATCTGATTCAAAATATCCCGGTTTTAAAAAGGCTATCTGGTTAGAGTGCACACAAGAAGCAGGGGAAATCATATTTGTTCCCAGCGGATGGTATCATCAAGTTCATAATTTGGAGGATACAATATCTATAAACCACAATTGGTTCAATGCCTATAACCTTTCTTGGGTGTGGAATTTACTTTTAAGAGACTACAATGAGGCCAAGGAATACATAGAAGACATCAAGGATATATGTGATGATTTTGAATGTCTCTGCCAGCGCAATCTTGCTGCTAACACAGGGATGAACTTTTATGACTTCTTCACTTTCATTTCATACTTCTCCTTGGCCAACTTGGTGCTGCTCTGCTACATAAACGGAAAAGATGGAAGTACTACTGGAAGTTCGTCAAGAGTAGCTCAACATTTATATTTGAATATTGGGTCTATTAGGAAGGTCGCATCAGAGATGAAAAACTTGCATGCTCTAGAAGGGAATCATGATTGCATTGTGGATATGATCAAAACATATGAAGATCCTAGGTTTTCCAAATTCTGCATACAAGTGGGAAAAACATATTTAACAATACACGAACAATCCAATTTGTTCTCTGATTTTGAGAGTGCTTCAACGGTTGAGTTGGCGGACCTCGGTGTTTTTAAAGCACACACTTCTTCCCAGGTTTACACACCAGAAGACCTCATCAAATTTATAGACACTGCTGTTGCAGAACTGGGCGACATTTTCATCGAGTCGTCTGTACTGCGTGTTGCTTGA 1434 0.3842 MALNMNIKGKIEKVNGKELSYSEFVERYMEKNKPVILTGLMDHHWKASTDWVTPKSQPNFQFFFNHFGSSKVQVADCDTRDFGDQKREEMLVSDFVGHCLQIEGSAVPCSNENGISNGDSLSVPYLKDWHFVKEYPDYVAYITPMFFCDDWLNLYLDNFRMNTYSDSSPQNTEICCSDYRFVYMGIKGSWTPLHADVFRSYSWSANVCGKKRWNVKSCVYNIFDEVSDSKYPGFKKAIWLECTQEAGEIIFVPSGWYHQVHNLEDTISINHNWFNAYNLSWVWNLLLRDYNEAKEYIEDIKDICDDFECLCQRNLAANTGMNFYDFFTFISYFSLANLVLLCYINGKDGSTTGSSSRVAQHLYLNIGSIRKVASEMKNLHALEGNHDCIVDMIKTYEDPRFSKFCIQVGKTYLTIHEQSNLFSDFESASTVELADLGVFKAHTSSQVYTPEDLIKFIDTAVAELGDIFIESSVLRVA 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02766 477 Pfam Cupin-like domain 23 273 IPR041667 -
Trre6g02766 477 ProSiteProfiles JmjC domain profile. 149 290 IPR003347 -
Trre6g02766 477 PANTHER ARGININE DEMETHYLASE AND LYSYL-HYDROXYLASE JMJD 5 327 - -
Trre6g02766 477 SMART cupin_9 124 290 IPR003347 -
Trre6g02766 477 SUPERFAMILY Clavaminate synthase-like 8 302 - -
Trre6g02766 477 Gene3D Cupin 2 274 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02766 Trre-Chr6 24720623 24724483 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02766 9 282 Glycosyltransferase AT1G78280 24.080 2.93e-12 67.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre6g02766 Cupin_8 2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02766 - - gsj:114409851 772.311