Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02741 ATGGATCTTGAGACAAAGCTTACAAAAAATTACTACTTCAAATCCAACATGAAAAATCATGAGAATAATCCATTTGGTGGGGTTCCTTCATCTCAAGGAATCTTACAAGATTTTAATCACATTGATAAATTTAATGTCAATGGTTCATTTTTCAATCCTATTTCCGGGGTCCAAAATTTTGCACCAAGTTATAATTTTACCTATGATGTTCATCATGATTTCAAGCCTTTTGTGGAAAATAATAGTAGTAATGGTAATGCTTATGTAATGGATAATTTCCTATATGGAAATTATGGCTTGAACAATCTTTCTCATAGGAATAATCAAGTGGAAATTATGGTTACTAATACTAACCAAAGTAATTATTTTCCCTTCAATATTTCTCAAGAAACCAAGCCTTTGAATTTTGGTGTACCAGATGAAGTTTCATGCATTTCACCACTGAATTATTACAAAAGAATTAACATGAACAAAAACAATAAGGGAATTCTTACCTCAAGAAAGACACAAAAAGTTCGTAAGAGGTCCAATGTTGTGAAAGGGCAATGGACGGTAGAAGAAGATGGGTTGTTGATTCAGCTGGTTGAACAATATGGATTGAGGAAGTGGTCTCATATTGCTCAGATGTTGCCTGGTAGAATTGGAAAACAGTGCAGAGAGAGGTGGCATAATCATCTAAGGCCCGACATTAAGAAGGACATATGGAGTGAGGAAGAGGACAAAATATTGATCAAAGCTCATGGAGAGATAGGAAACAAATGGGCTGAGATTGCTAAAAAGTTACCTGGAAGAACAGAAAACTCAATCAAAAACCATTGGAATGCAACAAAGAGAAGACAACATTCCAAAAGAAAGTGTCGTTCAAAGTACCCTAGAGGAACACTTCTACAAGAATATATCAAGAGCTTGAACTTAGACAGAAACCCTCCAAAAGATTATAGAAGAAAATCTTCAACTAATGCTAGTGTGCTGAAAAACAAAAGCACAACAATATCAGCTCAGTCTCACAAAGCCGAACAATCTTGTCCAAGTGATGATCAGTGTTTGGTACCAAGTTGTGATTTTGATGATGTCCCTGATTTTTGTTTCGACGAAAATTTGTTTCAAGATGGGTGTAGTATTGATTCTTTGCTAGATGATATACAATGTGATCAAATTATGGAAGAAAAAAAACATTGTGATAATGTTGAAACAGAGATGCCACTAGAGATTATGGAATCTATGCTTGGAATTGAAGTTAAGAAGGAGATGGTTTTCTCAAGTTAA 1266 0.346 MDLETKLTKNYYFKSNMKNHENNPFGGVPSSQGILQDFNHIDKFNVNGSFFNPISGVQNFAPSYNFTYDVHHDFKPFVENNSSNGNAYVMDNFLYGNYGLNNLSHRNNQVEIMVTNTNQSNYFPFNISQETKPLNFGVPDEVSCISPLNYYKRINMNKNNKGILTSRKTQKVRKRSNVVKGQWTVEEDGLLIQLVEQYGLRKWSHIAQMLPGRIGKQCRERWHNHLRPDIKKDIWSEEEDKILIKAHGEIGNKWAEIAKKLPGRTENSIKNHWNATKRRQHSKRKCRSKYPRGTLLQEYIKSLNLDRNPPKDYRRKSSTNASVLKNKSTTISAQSHKAEQSCPSDDQCLVPSCDFDDVPDFCFDENLFQDGCSIDSLLDDIQCDQIMEEKKHCDNVETEMPLEIMESMLGIEVKKEMVFSS 421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02741 421 ProSiteProfiles Myb-like domain profile. 175 226 IPR001005 -
Trre6g02741 421 FunFam Transcription factor MYB119 233 297 - -
Trre6g02741 421 Gene3D - 233 295 - -
Trre6g02741 421 CDD SANT 183 226 IPR001005 -
Trre6g02741 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 231 281 IPR017930 -
Trre6g02741 421 Pfam Myb-like DNA-binding domain 235 274 IPR001005 -
Trre6g02741 421 Pfam Myb-like DNA-binding domain 180 226 IPR001005 -
Trre6g02741 421 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 175 230 IPR017930 -
Trre6g02741 421 Gene3D - 179 232 - -
Trre6g02741 421 FunFam Transcriptional activator Myb isoform A 179 232 - -
Trre6g02741 421 ProSiteProfiles Myb-like domain profile. 227 277 IPR001005 -
Trre6g02741 421 PANTHER MYB PROTEIN-RELATED 157 328 - -
Trre6g02741 421 SUPERFAMILY Homeodomain-like 177 273 IPR009057 -
Trre6g02741 421 MobiDBLite consensus disorder prediction 315 337 - -
Trre6g02741 421 CDD SANT 235 277 IPR001005 -
Trre6g02741 421 SMART sant 179 228 IPR001005 -
Trre6g02741 421 SMART sant 231 279 IPR001005 -
Trre6g02741 421 MobiDBLite consensus disorder prediction 306 337 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02741 Trre-Chr6 24484230 24486243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02741 100 381 MYB Transcription Factor Family AT4G18770 55.405 5.30e-98 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre6g02741 Myb_DNA-binding 3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02741 K09422 - gmx:102662267 474.937