Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02704 ATGGTAATGGAGATTGTAATTTCTTTGATAATCTTATTTGTTGGGATTGGTATTTTAGTGTCTATTCATTTCTGCATAGTTGGGAGAGCATTCAGAAGGGATAATAATATTGGAGACATTCAAGGGCAGAATAGTAGGAGCACTTCAAAAGGAATGTTTGGTGGTGACTTGAAGAACCTTCCTTGTTTTGATTATGTGGAACCAGCAGAGAAAGGATACAACAACCTTGTGGATTGTGCTGTTTGTTTAGAGAGTTTTAAGGTTGGTGATGCTTGTAGATTGTTGCCTAAATGCAGACACAGTTTTCATGTTCAATGTATAGATTTGTGGATTCTCAAGACACCCTTTTGTCCAATTTGTAGAACATGGGTTCATTCACAAGTAATTGTGAGAGAAGAAAGTGTTGCTTCTGGTACTGATATTGTAGAAATTGAAATGCTATAG 444 0.3626 MVMEIVISLIILFVGIGILVSIHFCIVGRAFRRDNNIGDIQGQNSRSTSKGMFGGDLKNLPCFDYVEPAEKGYNNLVDCAVCLESFKVGDACRLLPKCRHSFHVQCIDLWILKTPFCPICRTWVHSQVIVREESVASGTDIVEIEML 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02704 147 ProSiteProfiles Zinc finger RING-type profile. 79 121 IPR001841 -
Trre6g02704 147 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 39 126 IPR013083 -
Trre6g02704 147 FunFam RING-H2 finger protein ATL2K 52 127 - -
Trre6g02704 147 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 1 128 - -
Trre6g02704 147 SMART ring_2 79 120 IPR001841 -
Trre6g02704 147 SUPERFAMILY RING/U-box 78 127 - -
Trre6g02704 147 Pfam Ring finger domain 78 121 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02704 Trre-Chr6 23963244 23963687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02704 49 125 C3H Transcription Factor Family AT4G30370 44.156 9.05e-18 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02704 - - gmx:102662620 176.407