Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02680 ATGGGTGGAAATGGTAAGCATAGATGGAAAATCTCCTTCCATCGTTCTTCCTCTCATTCTAGTAGAAACTCACAACCTCCCAAAGAGTTTCTATGTCCTATTACCGGTTCATTAATGTCCGACCCGGTCGTTGTTACTTCGGGTCAAACCTTCGAACGCCTCGCCGTCGAAATCTCCACCGAATTAAAATTCTCCCCCAAGTTAGAAGACGGAACCCGACCCGATTTCTCAACAATCATCCCCAATTTAGCTATCAAAACAACCATCAGAAACTGGTGCGAGAATTCCCGCACCCAACACCCTCCTACACCTGATTATACCGCCGTAGAGAAGCTAATTAAAGAAGCAATGGCTGCAGAGGCGGCGGAGAAAGAAGAACCGATTAGGGTTTCTGAAAAGGAGCTGCTCAACGCGGTGGCGGATAATCCTCCGGTGATATTCTCTCATGCTGCAACTGAGTTAGGTCCATGTGTCAACCGTTTCAACTCGGGATCTTCCTCTGAGGAATCGGTGATAATCGGTGAGAGTCCAGGAACGCCTTTACCTTTCACGCTTCGTCCAACGTGTTTCTCTCCTTCTTCATCTTCCTCGTTTGAGATCGAAGTTCAAAACCCTAACGTTCCTCCTTCGGAAGAAGAAGAAACTTTACTGAAGATGCTGAAGAGCAACGAGGTTTTCGAACAAGAACAAGGAGTGATTAGTCTTAGAAGTATCACTAGGAACAGAGAAGAAGCTAGGGTTTCGCTATGTACGTCGCGGATTCTCGTGATTCTGCGTTCTCTGATTGCTTCTCGTTACGTCGTCGTTCAAGTCAACGCTATTGCTTCTTTGGTCAACCTTTCGCTTGAGAAATCGAACAAGATGAGAATTGTGCGGTCAGGATTTGTTCCGTTTCTCATTGATGTGTTGAAGGGGGGATCCAGTGAGTCGCAGGAACATGCTGCGGGTGCACTGTTTAGTTTGGCTTTGGATGATGATAACAAGATGGCTATTGGTGTTCTCGGCGCGTTGCAGCCGCTAATGCACGCGCTGAGGTCTGATTCCGAGCGAACTCGCCATGACTCGGCACTTGCGCTCTATCATTTGACTCTAGTTCAGAGTAACAGAGTCAAGCTTGTGAAGCTCGGGGTGGTTCCGACATTGCTTTCGATGGTAATGACAGGGACAATGGCGAGTAGGGTGTTGTTGATTCTGTGCAATCTTGCTATGTCTGTGGAGGGAAGGACGGCAATGCTGGATGCCAATGCGGTGGAGTGTATGGTGAGTTTGTTGAGGGGGAACGAGTTGGACTCGGAAGCGACTCGGGAGAATTGTGTGGCGGCGTTGTATGCGTTGAGTCATGGAAGTTTGAGGTTCAAAGGATTGGCGAAGGAAGCGAAAGCTGTGGAGGTTTTGAGGGTGATCGAAGAGACAGGGACGGAGAGGGCGAGGGAGAAGGCTAAAAGGGTGTTGCAGAAGATGAGGGGTTTTGAAGATGGTGATGATGAAGATGATTCTGGGTTTGATAGTCTTTTTGAATCGAGCGGGATGGCTCGAACGAGGCACCGAGGTGCTGGAGCTAGGAACAACAACCTTGTCAATTCAACTACATTTTAG 1596 0.4831 MGGNGKHRWKISFHRSSSHSSRNSQPPKEFLCPITGSLMSDPVVVTSGQTFERLAVEISTELKFSPKLEDGTRPDFSTIIPNLAIKTTIRNWCENSRTQHPPTPDYTAVEKLIKEAMAAEAAEKEEPIRVSEKELLNAVADNPPVIFSHAATELGPCVNRFNSGSSSEESVIIGESPGTPLPFTLRPTCFSPSSSSSFEIEVQNPNVPPSEEEETLLKMLKSNEVFEQEQGVISLRSITRNREEARVSLCTSRILVILRSLIASRYVVVQVNAIASLVNLSLEKSNKMRIVRSGFVPFLIDVLKGGSSESQEHAAGALFSLALDDDNKMAIGVLGALQPLMHALRSDSERTRHDSALALYHLTLVQSNRVKLVKLGVVPTLLSMVMTGTMASRVLLILCNLAMSVEGRTAMLDANAVECMVSLLRGNELDSEATRENCVAALYALSHGSLRFKGLAKEAKAVEVLRVIEETGTERAREKAKRVLQKMRGFEDGDDEDDSGFDSLFESSGMARTRHRGAGARNNNLVNSTTF 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02680 531 SUPERFAMILY RING/U-box 12 100 - -
Trre6g02680 531 MobiDBLite consensus disorder prediction 512 531 - -
Trre6g02680 531 FunFam RING-type E3 ubiquitin transferase 9 100 - -
Trre6g02680 531 SUPERFAMILY ARM repeat 215 487 IPR016024 -
Trre6g02680 531 Pfam U-box domain 27 96 IPR003613 GO:0004842|GO:0016567
Trre6g02680 531 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Trre6g02680 531 MobiDBLite consensus disorder prediction 1 29 - -
Trre6g02680 531 FunFam RING-type E3 ubiquitin transferase 211 487 - -
Trre6g02680 531 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 294 331 IPR000225 GO:0005515
Trre6g02680 531 SMART arm_5 283 323 IPR000225 GO:0005515
Trre6g02680 531 SMART arm_5 404 447 IPR000225 GO:0005515
Trre6g02680 531 SMART arm_5 324 364 IPR000225 GO:0005515
Trre6g02680 531 Pfam Armadillo/beta-catenin-like repeat 324 363 IPR000225 GO:0005515
Trre6g02680 531 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
Trre6g02680 531 PANTHER U BOX DOMAIN-CONTAINING 21 487 - -
Trre6g02680 531 Gene3D - 214 338 IPR011989 -
Trre6g02680 531 Gene3D - 339 489 IPR011989 -
Trre6g02680 531 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 6 105 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02680 Trre-Chr6 23713718 23715313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02680 1 531 U-box Gene Family AT5G65200 55.971 0.0 555
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02680 - - gmx:100784564 736.487