Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02675 ATGGCTATGATTATTGGTGATGATAGTTACTTTTCAAAAATACAAGAAATTAATTCTGATAAGTCAACATGGAACACTAAGGCAAAGATAATAAGACTTTGGGAGGTATCTGATTTCAATCACAATACCATCCCTTTTTCTATTGAAATGGTCTTAATGGATGCTGATGGTGGTAGAATCCATGCTACTGTTAGGAAAACTCTTATTTACAAATTTAAGGATGACTTAAAAGAGGGAAAGGTTTATGGATTTGAAAATATGGGAGTTGCAACTAATGGTGGAGCTTATCGCACTACTCATCACCCTTATAAGTTAACTTTTCAGTTCACTTCTTTGATTCAAAAACTTTCTAACCAGAACATTGAGAGATCTCCATATTCCTTTACTCCAATTGCTGATATTGTTGGAGGTTCTTATGATACCGATTTTTTAGTTGATGTGATTGGGCTCTTGACTGGTGTTGGTTCTGAAAGGGAAGTTACCAACCAAAATGGAAGTACCACAAAACTCAATGTTATTGAGTTAGAGGCTGATGGGCATAAGATCCAATGCACACTGTTTGGGGCTTATGTTGATGTGCTTAATGGTTTTATTGGAGCTGGTGATGTCCAAAATGCTGTTGTCATTATGCAGCTTGCAAAGGCCAAAAAATTTCAAGACAACATTCACATTCAGAACTGCCTGAATTGTAGTGTCTTGCTGTTTAACCCTACATGTGAAGAAAGTGTTAGTCTAAGGGCAAGGCTTCCAGAATCTCAAGAAACTCCATCTCCTTTGACTTTAACTCAGCTCAATGTTGAGACTCAAGTTCAACCTATTGATGAGTTTTTGTTTAATACCCCAAGAAGTACTCTGCAAGCTCTTAAAGAGGCCACCACTGAACAAGTCAATGTTGTGCTTGGAACTGTCAAAAGGATTTTAAATCCTGATAGCTATTGGTATACTGCGTGTGTATGCAACAAGGCTGTCATCCCAGATTCTAGAATGTTTTTTTGTGAAAAGTGTAATAAACATGTAGTGAGGGTTTATCCTAGGTTTTGTATCAAGGTTAGAGTGATGGATCACACAGATTCTGCAACTCTTGTCATATTTGACAAAGAAGCAAGTTTGCTTTTCAATATGACATGTGCTGATATGATTGACGCAGCACAAGGGGCTGGTGGTGCTGGAGGTTTGCCACTTGAAATTGCTGAGTTGGTTGAGAAAACATGGCTGTTTAAGGTTGAGGCCAAACCTTCATTTAACCCAAGATTTGAACAATCCTTTCGTGTTAGGAAGATATGCAGAGATTCAGCCATAATCAACCAATTCAAAGCAAAGTGGGAAAAGGAAGAGGCTACTTTTATTAAAAATGTTAATGAGAATGGTTCTTTAAGTACTCTTTTTCTTAAAGGGAAAGATGTTTTGGTTGGTGGTACAGCAAATGTCTTATCTCAGGATTTTGAAACAGAATCTTCCACTTCTGTCAAAGGGAAAGAACTGATTGTTGATGGAACACCTGTTAAAGTTACTCAAGATTTAATGGAAAAATTTTCTTCTGCTGCTGTGAACCTTGCTGATGATTCAGTGGTAATTATGTCTCAAAACATGCCCCTGTCAGTGGAGAAAGTTGCAGTTCATAAAGGTAAATCTTCTGTTGTGGACTTAGAGGATGAGCAAGTTGCAGTTCGGAAAGGTAAATCTCATGTTGTGGACTTAGTGGATGAGCAAGTTTCAGATCAAAAAGGAAAATCTGATGTTGTTAAGTTAGATGCTGGTCATGTTGCTGTTAAGAAAGGAAAATCTGATGCTGTGGAGATAGCCAATGAACATGTTGCTGTTAAGAAAGGGAAATCTGATGGTGTTAAGGTAGATGATGATAATACTGCTGTCAAGAAAGGAAAATCTTATGCTGTTAAGGTAGATGATGGTAATGCTGCTGTTAAGAAAGGGAAAAGCAAGGCTGTCAAGGTAGATGATGAAGGAAAAACCCCTTTAGTGAAGAAAAAGGTAGCCGCTAAGAGAGTTTCACCTACACCACAAGAAGAAGATGATGATAATGCTCCAATCAAGCTTTTGAAGAGGGCTATCAAGATTGAAAAGCTAACCTAG 2091 0.3778 MAMIIGDDSYFSKIQEINSDKSTWNTKAKIIRLWEVSDFNHNTIPFSIEMVLMDADGGRIHATVRKTLIYKFKDDLKEGKVYGFENMGVATNGGAYRTTHHPYKLTFQFTSLIQKLSNQNIERSPYSFTPIADIVGGSYDTDFLVDVIGLLTGVGSEREVTNQNGSTTKLNVIELEADGHKIQCTLFGAYVDVLNGFIGAGDVQNAVVIMQLAKAKKFQDNIHIQNCLNCSVLLFNPTCEESVSLRARLPESQETPSPLTLTQLNVETQVQPIDEFLFNTPRSTLQALKEATTEQVNVVLGTVKRILNPDSYWYTACVCNKAVIPDSRMFFCEKCNKHVVRVYPRFCIKVRVMDHTDSATLVIFDKEASLLFNMTCADMIDAAQGAGGAGGLPLEIAELVEKTWLFKVEAKPSFNPRFEQSFRVRKICRDSAIINQFKAKWEKEEATFIKNVNENGSLSTLFLKGKDVLVGGTANVLSQDFETESSTSVKGKELIVDGTPVKVTQDLMEKFSSAAVNLADDSVVIMSQNMPLSVEKVAVHKGKSSVVDLEDEQVAVRKGKSHVVDLVDEQVSDQKGKSDVVKLDAGHVAVKKGKSDAVEIANEHVAVKKGKSDGVKVDDDNTAVKKGKSYAVKVDDGNAAVKKGKSKAVKVDDEGKTPLVKKKVAAKRVSPTPQEEDDDNAPIKLLKRAIKIEKLT 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02675 696 SUPERFAMILY Nucleic acid-binding proteins 126 252 IPR012340 -
Trre6g02675 696 Gene3D - 10 115 IPR012340 -
Trre6g02675 696 CDD RPA1_DBD_A_like 27 108 - -
Trre6g02675 696 Gene3D - 119 257 IPR012340 -
Trre6g02675 696 Gene3D - 278 436 IPR012340 -
Trre6g02675 696 CDD RPA1_DBD_C 283 427 IPR047192 -
Trre6g02675 696 CDD RPA1_DBD_B_like 146 250 - -
Trre6g02675 696 SUPERFAMILY Nucleic acid-binding proteins 284 427 IPR012340 -
Trre6g02675 696 PANTHER OS03G0429900 PROTEIN 12 412 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre6g02675 696 Pfam Replication factor-A C terminal domain 302 411 IPR013955 -
Trre6g02675 696 SUPERFAMILY Nucleic acid-binding proteins 11 118 IPR012340 -
Trre6g02675 696 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02675 Trre-Chr6 23636762 23639697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02675 14 364 Core DNA Replication Machinery Family AT2G06510 22.951 9.36e-17 82.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02675 - - tpra:123915045 755.747