Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02666 ATGGGAATTGCAGAGGAGAGAGTAGTGGCAGTTATTATGGTTGGAGGACCCACCAAAGGTACTCGATTCCGTCCATTATCATTCAACATTCCAAAACCACTCTTTCCATTAGCCGGACAACCCATGGTTCATCATCCAATCTCCGCTTGTCAAAAAATTCCAAATTTGGCTAAGATTTATCTTATTGGTTTCTACGAAGAACGCGAATTCGCATTATATGTATCCTCCATTTCCAACGACCTTAAACTACCTGTTAGGTACTTGAAGGAGGACAAACCACATGGTTCAGCTGGTGGTCTTTATAACTTTAAAGATCTCATCATGGAAGAAGATCCGTCACATATTTTCTTGCTCAATTGTGATGTTTGCTGCAGTTTTCCACTCCCACAAATGCTTGATGCTCACAAGAAATATGGTGGCATGGGAACAATACTAGTTGTCAAGGTTTCTCCAGAGTCAGCGAGCGAATTTGGGGAATTGGTAGCTGATCCTGTCACTAATGAACTCTTGCATTACACAGAGAAACCTGAAACTTTTGTTAGTGATCGTATAAACTGCGGTGTTTATATATTTACACCAGATATCTTTACTGCCATTGAGGGTGTTTCTTCTCAGCGGAAAGACAGGGCTAACTTAAGACGTGTCTCCAGCTTTGAAGCAATGCAGCCAGACGCAAGGAGTCTTACCGCCAATTATGTCAGATTGGATCAAGATATCCTCTCACCTCTTGCAGGAAAAAAACAGTTGTATATATATGAAACCATGGATTTCTGGGAACAAATCAAAACTCCTGGAATGTCCATAAAATGTTCGGCCTTGTATCTTTCGCAATTTCGTCACACAGCCCCCCACCTATTAGAAAATGGAGATGGTATTAAGAAAGCCTGCATAATTGGTGATGTTTATATTCATCCATCAGCAAAAGTGCATCCGTCTGCAAAGATTGGTCCTGGCGTATCAATATCAGCAAATGCTCGTATAGGAGCTGGTGCAAGGCTCATAAATTGTATAGTCCTTGATGATGTCGAAATCAAGGAGAATGCTGTTGTTATTCATGCAATTGTTGGATGGAAATCCTCCATTGGACGATGGGCTCGTGTCCAGGGTCGTGGAGATTACAATGCAAAACTTGGGGTCACTATTCTTGGTGAATCTGTTGCTGTTGAGGATGAGGTAGTGGTTATTAATAGCATTGTCCTTCCACACAAGACCTTAAATGTCGGCGTTCAAGATGAGATTATATTATAG 1248 0.4143 MGIAEERVVAVIMVGGPTKGTRFRPLSFNIPKPLFPLAGQPMVHHPISACQKIPNLAKIYLIGFYEEREFALYVSSISNDLKLPVRYLKEDKPHGSAGGLYNFKDLIMEEDPSHIFLLNCDVCCSFPLPQMLDAHKKYGGMGTILVVKVSPESASEFGELVADPVTNELLHYTEKPETFVSDRINCGVYIFTPDIFTAIEGVSSQRKDRANLRRVSSFEAMQPDARSLTANYVRLDQDILSPLAGKKQLYIYETMDFWEQIKTPGMSIKCSALYLSQFRHTAPHLLENGDGIKKACIIGDVYIHPSAKVHPSAKIGPGVSISANARIGAGARLINCIVLDDVEIKENAVVIHAIVGWKSSIGRWARVQGRGDYNAKLGVTILGESVAVEDEVVVINSIVLPHKTLNVGVQDEIIL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02666 415 SUPERFAMILY Nucleotide-diphospho-sugar transferases 9 357 IPR029044 -
Trre6g02666 415 Pfam Nucleotidyl transferase 10 209 IPR005835 GO:0009058
Trre6g02666 415 FunFam Mannose-1-phosphate guanyltransferase alpha 7 278 - -
Trre6g02666 415 FunFam Putative GDP-mannose pyrophosphorylase 284 412 - -
Trre6g02666 415 CDD M1P_guanylylT_A_like_N 10 274 - -
Trre6g02666 415 Gene3D Hexapeptide repeat proteins 281 412 - -
Trre6g02666 415 PANTHER SUGAR-1-PHOSPHATE GUANYL TRANSFERASE 9 415 - -
Trre6g02666 415 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 3 278 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02666 Trre-Chr6 23530528 23535327 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02666 4 350 Eukaryotic Initiation Factors Gene Family AT2G34970 21.964 7.38e-06 46.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02666 K00966 - gmx:100817201 757.673