Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02660 ATGGCTACCGCCGGTGATGTTCTCAGACAGAGTTTACCGGAAGTGGGTGTTGGTGGTGTAGCTGAGTTACATGTCCTTGCTGTGGATGATAGTTTTGTTGATCGTAAAGTTATTGAAAGGTTGCTCAAATTCACTTCTTGCAAAGTGACTGTGGTAGAGAGTGGAACTAGAGCTTTACAGTATCTGGGGTTAGATGGTGACACGAGTTCCATTGGTTTTGATGGTGTGAAGGTTAATATGATAATGACAGATTATTCCATGCCTGGGATGACAGGATATGAACTACTCAAGAAGATTAAGGAATCATCTGTTTTTAGAGAAATTCCAGTGGTGGTTATGTCCTCTGAAAATATCTTAACCCGAATCGATAGTTGTTTGGAGGAAGGAGCAGAGGAGTTTCTATTGAAACCTGTCAAGTTATCCGACGTGAAACGCTTAACAGATTTCATCATGAGCGGTGAAGGGAAGAAAGTAGGAGGAAAAAGATCTCAAAAAAGAAACCGATCAGATGATTGCATTTCATCTCTATCAACCGCATGCTCAACGGTTTCTCATCCATGCGATCTATCATCACTATCACCGTCTGCAATGTCGTCAAAGAAATCTAGACTATGA 615 0.413 MATAGDVLRQSLPEVGVGGVAELHVLAVDDSFVDRKVIERLLKFTSCKVTVVESGTRALQYLGLDGDTSSIGFDGVKVNMIMTDYSMPGMTGYELLKKIKESSVFREIPVVVMSSENILTRIDSCLEEGAEEFLLKPVKLSDVKRLTDFIMSGEGKKVGGKRSQKRNRSDDCISSLSTACSTVSHPCDLSSLSPSAMSSKKSRL 204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02660 204 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 163 IPR045279 GO:0009736
Trre6g02660 204 SUPERFAMILY CheY-like 23 149 IPR011006 -
Trre6g02660 204 Gene3D - 23 179 - -
Trre6g02660 204 SMART REC_2 23 147 IPR001789 GO:0000160
Trre6g02660 204 Pfam Response regulator receiver domain 25 144 IPR001789 GO:0000160
Trre6g02660 204 ProSiteProfiles Response regulatory domain profile. 24 151 IPR001789 GO:0000160
Trre6g02660 204 CDD REC_typeA_ARR 25 146 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02660 Trre-Chr6 23492382 23494536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02660 23 179 Response Regulator Gene Family AT3G48100 69.620 1.02e-75 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Trre6g02660 Response_reg 4.1e-19 CL0304