Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02637 ATGGATCACAATCATAAACTAGCAACAACAACAAGTGAAGGAAGAGAAGGACAACCTATAAGATGTAAAGCTGCGGTTGCAAGAAAACCTGGTGAAGCATTGGTTATAGAAGAGATCATTGTGGCTCCACCAATGCCTCGTGAGGTTCGGATTCGTATTCTATGTACATCTCTTTGCCACAGTGACATCACTGTTTGGAAGATGCAGGAACATCCTGGCATTTTCCCAAGAATTTTTGGTCATGAGGCAGCTGGGGTTGTGGAAAGTGTAGGGAAGGATGTAACCGAAGTCGCAAAAGGAGATACGGTTATTCCAATTTTCCTACCAGATTGTGGGGAGTGTATAGATTGCAAATCAACCAAGAGCAACTGTTGTACTAATTTCCCATTCAAGGTGTCTCCTTGGATGCTAAGAAATGAGAACACCAGATTCACTGACCTAACCGGAGAGACCATATACCATTTCATGTTTGTTTCAAGTTTCAGCGAGTACACTGTGGTCGACATCGCCAATATAACAAAGATTGATCCACAAATCCCTCCTGATAGGGCTTGTCTTCTCAGTTGTGGTGTTTCAACAGGGGTAGGTGCTGCTTGGAGAACAGCAAGTGTGGAGCCAGGATCTACGGTGGCTATTTTTGGACTGGGATCTGTTGGATTGGCAGTTGCAGAGGGAGCTAGGGTTTGTGGAGCAACTAGAATTATTGGTGTGGATGTCAACCCTGAAAAATTTGAAATTGGAAAAAAGTTTGGACTCACAGACTTCGTCAATGCTGTTGAATGTGGAAACAAACCTGTGAGCCAGATTATCATAGAGATGACTAATGGGGGAGCAGATTATTGCTTTGAATGTGTTGGTATGACATCATTGGTGCATGAAGCATATGCTTCTTGTAGAAAGGGTTGGGGAAAAACAATTGTTGTAGGAGTGGACAAGCCAGGAGCTAGGTTGAGCCTCAGTTCTAGTGAGGTCCTTCATGATGGAAAGAGCCTTATGGGATCTGTGTATGGAGGACTCAAACCCAAATCTCATGTGCCAATTCTGCTTAAACGTTACATGGACAAGGAACTGCAGTTGGATGAATTTGTGACTCATGAGGTGGAATTTAAGGACATCAATAAAGCATTTGATCTATTGAATAAAGGACAGTGTCTTCGATGTGTGATTTGGATGGAAAAATGA 1182 0.4289 MDHNHKLATTTSEGREGQPIRCKAAVARKPGEALVIEEIIVAPPMPREVRIRILCTSLCHSDITVWKMQEHPGIFPRIFGHEAAGVVESVGKDVTEVAKGDTVIPIFLPDCGECIDCKSTKSNCCTNFPFKVSPWMLRNENTRFTDLTGETIYHFMFVSSFSEYTVVDIANITKIDPQIPPDRACLLSCGVSTGVGAAWRTASVEPGSTVAIFGLGSVGLAVAEGARVCGATRIIGVDVNPEKFEIGKKFGLTDFVNAVECGNKPVSQIIIEMTNGGADYCFECVGMTSLVHEAYASCRKGWGKTIVVGVDKPGARLSLSSSEVLHDGKSLMGSVYGGLKPKSHVPILLKRYMDKELQLDEFVTHEVEFKDINKAFDLLNKGQCLRCVIWMEK 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02637 393 Pfam Zinc-binding dehydrogenase 218 338 IPR013149 -
Trre6g02637 393 PANTHER ALCOHOL DEHYDROGENASE 17 389 - -
Trre6g02637 393 FunFam S-(hydroxymethyl)glutathione dehydrogenase 194 334 - -
Trre6g02637 393 SUPERFAMILY GroES-like 16 202 IPR011032 -
Trre6g02637 393 Gene3D - 194 334 - -
Trre6g02637 393 Pfam Alcohol dehydrogenase GroES-like domain 47 174 IPR013154 -
Trre6g02637 393 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 80 94 IPR002328 GO:0008270|GO:0016491
Trre6g02637 393 Gene3D - 25 386 - -
Trre6g02637 393 SUPERFAMILY GroES-like 342 390 IPR011032 -
Trre6g02637 393 FunFam Alcohol dehydrogenase 6 25 206 - -
Trre6g02637 393 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 179 354 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02637 Trre-Chr6 23251956 23255283 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02637 48 381 Monolignol Biosynthesis Gene Families AT2G21730 25.146 3.96e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02637 K00121 - gmx:100817521 673.7