Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02630 ATGTCAAGTCGAGGCGGAAGGGATCGTTCTAGGAGGGATTATCCTTCAAGATATGAAGACAATAAGGGTAATGGTGGCACGGGGCGCGGTGGTGCTGGCGGTGGTAACAGTAGCAATCCTCCTTCCAGGCACCTTTGGGTTGGGAATCTATCTCACAATATTGTAGAGGATGAACTTGCTCACCCTTTTATACGGTTTGGACCGCTGGAAAAAGTTGCATTTCAACCCGGTCGAAGCTATGCTTTCATCAACTTTGAAGTGGATGAAGATGCCATTGATGCTATGAGATCACTGCAAGGTTTTCCTCTTGCTGGCAATCCACTTAGAATCGAGTTTGCAAAGGCGGACAAGCCATCAACAGTAACACGTGATGAAGATTATTCACGTGATGAACGAAGACCAGCATTAAGGGGATCTCCTTTCTCTCAAAGAGAGATTAGAGGACGTCATGGTAGCCCTGAACCAAATTATTCTGACAAATCCAAGTTAAGTGATAAAAATCCAGAGCCCAGTGAGGTTTTGTGGATTGGGTTCCCGGCTCAGTTGAAGGTGGATGAATTAATTTTGGGACGGGCTTTTTCTCCATTTGGCGAGATTGAGAAGATTTCGGCATTTCCAGGTCGGAGTTATGCATTTGTTCGCTATAGAAATCAGGCTTCAGCATGCAGAGCATTGGAGGCTCTGAATGGCAAGTTATTTGGGAATCCCCGTGTTCATATCACTTTTGCCAAGAGTGAATCTGGATCAAGCAGTGGGAAGAGCTCATTTAATGGCCCTCGATCCCCATCATACAAGTCAGGTGGCCGCGGTGGATCTTCCGAGAACTTCAGGCAGGATAGGAGCTTTGGCGGGGAGCAGAATATTAGTTCTCCGAATATGTTTGTGAATTGGGATTCTCGAGATTCTGATGCTTATGATTTTAACAACAGGGGTTCTTCATGGGCTGGTGGAGCTAACACATATGGGCAAAGGAAAATTGGAGAGAAGGGCACTCCACTTGGAGTAGCACAAGAATTTTATGAACATATAAGTAGTCCATCAAGAGAAAGACACTTTCATCAGGGTGATTTTCCACAGAAATATCCTCAAAGGGGTGCATTCTTTGAAGATCTGCAGGGCTTTCCTGAAGATGCTCCCTATCTACATGTGGCTAAAAAGCTCAAGAGTGATTCTTCTCCTTCTGAGAAAGAGCTTCCAGAGTACGCTTTCACCGAGTTAGAAAGACAAAAACATGTTTTCCCAAGATTATTACCTGATTTTCCTCATCATGAACCTTATGATAAAAGCTTTGATGCTGGAAATTTCACTTACGGACAAACATTTAATCACCCACCAAATTCACCTCTGGTTCGCATAGATAGACACGAAGGCCGGAAACCTTATGATAGTTTCCAAATGGGTCCTGGTGCTCTCCAATCAAATTTTGTTGAGAAAAAAAGATTTACACCTGAACCTGATAATTCATCTTCATCTGAGTGGAAATGGGAAGGAACCATTGCTAAAGGCGGGACCCCTATTTGTCGTGCTCGCTGCTTCCCTGTAGGGAAAGTCCTAGATATTGCATTACCAGAATTCTTAGATTGCACTGCAAGAACTAGTCTAGACATGCTGTCCAAGCATTACTACCAAGCAGTTGGAGTTTGGGTTGTTTTCTTTGTGCCAGGAAGTGATGCTGACATTGAATTCTACAATGAGTTTATGCATTATCTGGAGGAAAAGCAGCGGGCTGCGGTTTCCAAGGTGGATGACAAGACCACCTTATTTCTCGTACCTCCATCAGATTTCTCAGAGAAAGTGTTGAAGGTACCTGGTAAGTTGAGCATATCTGGTGTTATTCTGAGGTTGGAATATCCTGGTTTAAACCAAGGTCCTATGCACATTGAAAGAGAAATGAAAAACGAAAACCAATCGTCCTATAATGAGAACATATTGTATCCAAATTCGTCTTATCCATCCGTACGCATACCTCCAAACCCACCATCTATTTCAGAATTGGGTAATTCTGGTATCAGCAATCTTTCATTTCCGGGAAACAAATTTGAAGCAGCTCCAATAGTTTCTGATTCAGCTCGTTCTGCGGTTGGCATGCCTGAGTCCTATGATGAAAGAAGTCGCTACTATCCTTCCAACCAGCCGCGGACATCTGTACCAAACTGGCCTTCTCAAAATCCACAAAATTTAATCTCTAATAGATCTTTACCTTCACATCAATTCAGTGGTGCTGTTGAACCTATTGCCGAGGAGCGTCATCCCATCATGAATGTAAGTTCAACTCAACATTTCAGTGGAAATTCTGGTATTCCATTTGGCGGTAATAACATGTCATCATATCAAGAAATGAGAAATTTCGATCCTTCAACCCCCGTGGGATCCCTGCAGCCAGAACAGCTTGCACAACTAGCTGCATCTCTTCTTGAGAAGCAGAGGCAATTGGGCAGCTCTATGAGCACATCTGCAATGAGTGATCCAAGACAGAACAGATTTAATGAGTCCGAAACCTCATCCAGACAATCATATGCTGCAGAAAACAACCCGGCGAATTCCGAACTCTCGACATCTCAGTTTGGTCACGTTCTACAGTTGCAAAAGCAACTTCAGATGATGCCAAATGTGCCTCAGTTGTCACAGATGGCTCAGAGAGAACCACAAAGAGAGGTCAATGGAAATCAGCAATTGGCAGATAATAGCTTGCAGGAAGGTGGAGACGCAGATACACAGAAACGTTTAGAAGCAACCCTAAAGCTGGCTGCTACTCTTCTTCAGCAAGTTCATCAAGGAAATGGGAATTGA 2790 0.4373 MSSRGGRDRSRRDYPSRYEDNKGNGGTGRGGAGGGNSSNPPSRHLWVGNLSHNIVEDELAHPFIRFGPLEKVAFQPGRSYAFINFEVDEDAIDAMRSLQGFPLAGNPLRIEFAKADKPSTVTRDEDYSRDERRPALRGSPFSQREIRGRHGSPEPNYSDKSKLSDKNPEPSEVLWIGFPAQLKVDELILGRAFSPFGEIEKISAFPGRSYAFVRYRNQASACRALEALNGKLFGNPRVHITFAKSESGSSSGKSSFNGPRSPSYKSGGRGGSSENFRQDRSFGGEQNISSPNMFVNWDSRDSDAYDFNNRGSSWAGGANTYGQRKIGEKGTPLGVAQEFYEHISSPSRERHFHQGDFPQKYPQRGAFFEDLQGFPEDAPYLHVAKKLKSDSSPSEKELPEYAFTELERQKHVFPRLLPDFPHHEPYDKSFDAGNFTYGQTFNHPPNSPLVRIDRHEGRKPYDSFQMGPGALQSNFVEKKRFTPEPDNSSSSEWKWEGTIAKGGTPICRARCFPVGKVLDIALPEFLDCTARTSLDMLSKHYYQAVGVWVVFFVPGSDADIEFYNEFMHYLEEKQRAAVSKVDDKTTLFLVPPSDFSEKVLKVPGKLSISGVILRLEYPGLNQGPMHIEREMKNENQSSYNENILYPNSSYPSVRIPPNPPSISELGNSGISNLSFPGNKFEAAPIVSDSARSAVGMPESYDERSRYYPSNQPRTSVPNWPSQNPQNLISNRSLPSHQFSGAVEPIAEERHPIMNVSSTQHFSGNSGIPFGGNNMSSYQEMRNFDPSTPVGSLQPEQLAQLAASLLEKQRQLGSSMSTSAMSDPRQNRFNESETSSRQSYAAENNPANSELSTSQFGHVLQLQKQLQMMPNVPQLSQMAQREPQREVNGNQQLADNSLQEGGDADTQKRLEATLKLAATLLQQVHQGNGN 929
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02630 929 Gene3D - 33 122 IPR012677 -
Trre6g02630 929 MobiDBLite consensus disorder prediction 809 850 - -
Trre6g02630 929 MobiDBLite consensus disorder prediction 704 727 - -
Trre6g02630 929 FunFam RNA recognition motif (RRM)-containing protein 158 251 - -
Trre6g02630 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 237 IPR000504 GO:0003723
Trre6g02630 929 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 45 108 IPR000504 GO:0003723
Trre6g02630 929 CDD SPOC_FPA-like 494 613 - -
Trre6g02630 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 172 245 IPR000504 GO:0003723
Trre6g02630 929 MobiDBLite consensus disorder prediction 1 19 - -
Trre6g02630 929 MobiDBLite consensus disorder prediction 116 167 - -
Trre6g02630 929 Gene3D - 149 287 IPR012677 -
Trre6g02630 929 SMART rrm1_1 173 241 IPR000504 GO:0003723
Trre6g02630 929 SMART rrm1_1 44 111 IPR000504 GO:0003723
Trre6g02630 929 MobiDBLite consensus disorder prediction 873 900 - -
Trre6g02630 929 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 43 115 IPR000504 GO:0003723
Trre6g02630 929 MobiDBLite consensus disorder prediction 691 727 - -
Trre6g02630 929 SUPERFAMILY RNA-binding domain, RBD 29 124 IPR035979 GO:0003676
Trre6g02630 929 MobiDBLite consensus disorder prediction 761 791 - -
Trre6g02630 929 MobiDBLite consensus disorder prediction 1 43 - -
Trre6g02630 929 Pfam SPOC domain 488 603 IPR012921 -
Trre6g02630 929 MobiDBLite consensus disorder prediction 873 908 - -
Trre6g02630 929 PANTHER RNA RECOGNITION MOTIF-CONTAINING 32 923 - -
Trre6g02630 929 SUPERFAMILY RNA-binding domain, RBD 184 272 IPR035979 GO:0003676
Trre6g02630 929 MobiDBLite consensus disorder prediction 115 168 - -
Trre6g02630 929 MobiDBLite consensus disorder prediction 244 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02630 Trre-Chr6 23193263 23204024 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02630 36 267 Eukaryotic Initiation Factors Gene Family AT1G22760 28.807 7.74e-11 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02630 - - gmx:100811668 1227.62