Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02601 ATGAAGAAGGTTTCTCTTTATGCTTGTTTACTACTCAACTTGAGTCTTTTAGTTATTTTTCCTTATAGCAAAGCTAGTCAAGCTGATAGACTTGATAAGTTGATTCTTTCTAGAAGCTCACAGAATCCTCCTAAGACTCTTTCTTGGGAAGAGGAAGATGCATTGAATACACATTCTTCATCTTCTTCTTCTTCTTATGTTGCAGCACCTCAAGAGGGGCTAAGGGAAGCTGATAAGATTGTCACATTGCCTGGTCAACCCTATGGTGTGAATTTTGACCAATACTCTGGCTATGTCACTGTTAATCCTGAGGCTGGAAGAGAACTTTTCTATTATTTTGTGGAATCTCCATATAACCCTTCAACAAAACCTTTAGTATTATGGCTCAATGGAGGACCTGGTTGCTCCTCACTTGGTTATGGAGCATTTGAGGAGCTAGGACCCTTCAGAATCAACTCTGACGGCAAAACACTATACCGAAACAAGTATGCTTGGAATGAAGTGGCAAATGTACTCTTCTTGGAGTCTCCAGCAGGAGTAGGATTTTCCTACTCAAACACAACTTCTGATTATGACAAATCAGGAGATAAGAGAACTGCTCAAGATGCTTATGTCTTCCTAATCAACTGGCTAGAGAGATTTCCAGAGTACAAAACTAGAGATTTTTACATAACAGGAGAGAGTTATGCTGGTCATTATGTTCCTCAACTCGCATCCACGATTCTTCACAACAATAAACTCTACAACCAAACCATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCCACAGGTTTACATGGGTTATATGATTACTTTTGGACTCATGCATTGAACTCGGATCAAACACATGAGTTGATTGAGAAGTATTGTGACTTCACTACTCGAAATCAATCAAAAATATGTATCAATGCAACCGATAAGGCTTTAATTGAGAAAGGAAACATAGACTTCTATAACATCTATGCTCCACAGTGTCATGACTCTTCTCTCAAAAATGGTTCAACTGGTTATGTAACTAATGATTTTGACCCTTGTTCTGATCACTATGGTATTGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTTCATGCAAAATCTACAAATTGGAGCCATTGCAGTGATCTTTATTACAAATGGAAAGACAGTCCAATTACCGTCCTACCTACCATCAAGTATCTCATCGATAATGGCATTAAATTATGGATATACAGTGGTGATACAGATGCAAGGGTTCCAGTCACGTCTTCTCGATATTCAATCAACAAACTCAAACTTCCTATCAACTCTGCTTGGCGTCCGTGGTATTCAGGAAAAGAGATTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGGGGAGCAGGACATATTGTTCCAAGCTGGCAACCAGAAAGGGCTTTGATTTTGATCTCATCATTCCTCTATGGAAGCCTGCCTACTATTTCACCATCAAATTAA 1488 0.3905 MKKVSLYACLLLNLSLLVIFPYSKASQADRLDKLILSRSSQNPPKTLSWEEEDALNTHSSSSSSSYVAAPQEGLREADKIVTLPGQPYGVNFDQYSGYVTVNPEAGRELFYYFVESPYNPSTKPLVLWLNGGPGCSSLGYGAFEELGPFRINSDGKTLYRNKYAWNEVANVLFLESPAGVGFSYSNTTSDYDKSGDKRTAQDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLASTILHNNKLYNQTINLKGISIGNAWIDDATGLHGLYDYFWTHALNSDQTHELIEKYCDFTTRNQSKICINATDKALIEKGNIDFYNIYAPQCHDSSLKNGSTGYVTNDFDPCSDHYGIAYLNRPEVQKALHAKSTNWSHCSDLYYKWKDSPITVLPTIKYLIDNGIKLWIYSGDTDARVPVTSSRYSINKLKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHIVPSWQPERALILISSFLYGSLPTISPSN 495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02601 495 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 81 473 IPR001563 GO:0004185|GO:0006508
Trre6g02601 495 Gene3D - 392 486 - -
Trre6g02601 495 SUPERFAMILY alpha/beta-Hydrolases 77 487 IPR029058 -
Trre6g02601 495 ProSitePatterns Serine carboxypeptidases, serine active site. 224 231 IPR018202 GO:0004185
Trre6g02601 495 FunFam Carboxypeptidase 74 332 - -
Trre6g02601 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 174 184 IPR001563 GO:0004185|GO:0006508
Trre6g02601 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 210 235 IPR001563 GO:0004185|GO:0006508
Trre6g02601 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 456 469 IPR001563 GO:0004185|GO:0006508
Trre6g02601 495 PRINTS Carboxypeptidase C serine protease (S10) family signature 161 173 IPR001563 GO:0004185|GO:0006508
Trre6g02601 495 Pfam Serine carboxypeptidase 84 484 IPR001563 GO:0004185|GO:0006508
Trre6g02601 495 MobiDBLite consensus disorder prediction 41 65 - -
Trre6g02601 495 Gene3D alpha/beta hydrolase 74 332 IPR029058 -
Trre6g02601 495 ProSitePatterns Serine carboxypeptidases, histidine active site. 456 473 IPR033124 GO:0004185
Trre6g02601 495 Gene3D - 350 381 - -
Trre6g02601 495 FunFam Carboxypeptidase 392 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02601 Trre-Chr6 22916942 22919232 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02601 347 487 Calmodulin-binding Proteins AT2G22960 30.405 6.55e-13 65.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02601 K16297 - mtr:11443022 866.3