Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02600 ATGGGGATAAGTACATGTTCAATCCATTCCCACTACCAATTGGGCTATTATTTTGTTGAGTCTCCATATAACCCTTCAACTAAACCTTTATTATTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTTGGGTATGGAGCCTTTGAAGAGATAGGACCCTTCAGAATCAACTCTGATGGCAAAACGCTATACCGTAACAAATATGCATGGAATGAAGCGGCAAATGTGCTCTTCTTGGAATCTCCAGCAGGAGTAGGATTTTCCTACTCAAACACCACTTCTGACTATTACAAGGCAGGAGATAAGGCAACTGCCAAGGATTCCTATGTCTTCCTAATCAACTGGCTAGAGAGATTTCCAGAGTACAAAACAAGAGATGTTTACATAGCCGGAGAGAGTTATGCCGGTCACTATGTTCCTCAGCTTGCATCCACTATTCTTCACAACAATAAACTCTATAAACAAACCATCATTAACCTCAAAGGCATTTCTATTGGGAATGCTTGGATTGATGAGGCCACAGGTTCAAAGGGGTTATATGATTACTTTTGGACTCATGCTTTGAATTCAGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTTCTGAAAATACTTCAGCAATATGTAACAATGCAACAGATAAGGCTTTAATTGAGAAAGGAAACATAGACTTCTATAACATCTATGCTCCACAGTGTCATGACTTTTCTCTCAAAAATGGATCAACTGGTTATGTAACTAATGACTTTGACCCTTGTTCTGATTATTATGGCATTGCCTATCTAAATAGACCAGAGGTTCAAAAGGCTCTCCATGCAAAGCCTACAAATTGGAGCCATTGCAGTGATCTTATTCCTGGATGGAATGACAGTCCTCTTACCGTTCTTCCCACCATCAAGTATCTCATTGATAGTGGTATTAAATTATGGATATACAGTGGTGATACTGATGCAAGAGTTCCAGTTACAACTTCAAGATATGCAATCAACACCTTCAAGCTCCCTATCAACTCTGCTTGGCGTCCGTGGTATTCAGGAAAAGAGATTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGAAAGGGCTTTGACTTTGATCTCATCATTCCTCTATGGAAGCCTGCCCACTGTTTCACCATCAAATTAA 1206 0.4046 MGISTCSIHSHYQLGYYFVESPYNPSTKPLLLWLNGGPGCSSLGYGAFEEIGPFRINSDGKTLYRNKYAWNEAANVLFLESPAGVGFSYSNTTSDYYKAGDKATAKDSYVFLINWLERFPEYKTRDVYIAGESYAGHYVPQLASTILHNNKLYKQTIINLKGISIGNAWIDEATGSKGLYDYFWTHALNSDQTHELIEKYCDFTSENTSAICNNATDKALIEKGNIDFYNIYAPQCHDFSLKNGSTGYVTNDFDPCSDYYGIAYLNRPEVQKALHAKPTNWSHCSDLIPGWNDSPLTVLPTIKYLIDSGIKLWIYSGDTDARVPVTTSRYAINTFKLPINSAWRPWYSGKEIGGYVVGYKGLTFVTVRGAGHLVPSWQPERALTLISSFLYGSLPTVSPSN 401
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02600 401 SUPERFAMILY alpha/beta-Hydrolases 12 392 IPR029058 -
Trre6g02600 401 ProSitePatterns Serine carboxypeptidases, histidine active site. 362 379 IPR033124 GO:0004185
Trre6g02600 401 Gene3D - 256 288 - -
Trre6g02600 401 ProSitePatterns Serine carboxypeptidases, serine active site. 129 136 IPR018202 GO:0004185
Trre6g02600 401 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 13 379 IPR001563 GO:0004185|GO:0006508
Trre6g02600 401 FunFam Carboxypeptidase 252 394 - -
Trre6g02600 401 FunFam Carboxypeptidase 2 238 - -
Trre6g02600 401 Gene3D - 298 392 - -
Trre6g02600 401 PRINTS Carboxypeptidase C serine protease (S10) family signature 115 140 IPR001563 GO:0004185|GO:0006508
Trre6g02600 401 PRINTS Carboxypeptidase C serine protease (S10) family signature 66 78 IPR001563 GO:0004185|GO:0006508
Trre6g02600 401 PRINTS Carboxypeptidase C serine protease (S10) family signature 362 375 IPR001563 GO:0004185|GO:0006508
Trre6g02600 401 PRINTS Carboxypeptidase C serine protease (S10) family signature 79 89 IPR001563 GO:0004185|GO:0006508
Trre6g02600 401 Gene3D alpha/beta hydrolase 1 238 IPR029058 -
Trre6g02600 401 FunFam Carboxypeptidase 298 392 - -
Trre6g02600 401 Pfam Serine carboxypeptidase 12 390 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02600 Trre-Chr6 22910867 22913375 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02600 253 393 Calmodulin-binding Proteins AT2G22960 27.891 1.34e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02600 K16297 - mtr:11443022 718.383