Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02599 ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTGAGTCTTTTGGTTATTTTTCCTTATAGCAAAGCTAGTCAAGCTGATAAACTTGATGAGTTGATTCTGTCTAGAAGCTCACAAAATCCTCCTAAGACTTTTACTTGGGAAGTGGAAGATACATTGAAAACACAATCTTCTTCTTATGTTGCAGCACCTCAAGAGGGATTAAGGCAAGCTGACAAGATTGTCACATTGCCTGGTCAACCTTATGGAGTGAATTTTGAACATTACTCTGGCTATGTCACTGTTGATGCTGAGGCTGGAAGAGAACTTTTCTATTATTTTGCTGAGTCTCCAAATAACCCTTCAACTAAACCTTTAATATTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTTGGGTATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAGTAAACTCTGATGGAAAAACACTATACCGAAACCCATATGCTTGGAATGAAGTTGCAAATGTGCTCTTCTTAGAATCTCCAGCAGGAGTAGGATTTTCACACTCAAACACAACTTCTGACTATGACAAGTCAGGAGATAAGAGAACTGCCCAAGATGCTTATGTTTTCCTAATCAACTGGCTAGAGAGATTTCCAGAATACAAAACCAGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCACTATGTTCCTCAACTCGCATCCACTATTATTCAAAACAATAAATACTTTAAACAAACCATTATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCCACAAGTTTAAAGGGGTTATTTGATTACTTATGGACTCATGCTTTGAACTCAGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTACAGAAAATACTTCAGCCATATGTAACAATGTAACAAATAGGGCTATAATTGAGAAAGGACGCATCGACTTCTATAACATCTATGCTCCACTTTGTCATGACTCTTCTCTCAAAAATAGTTCAACTGGTTATGTAACTAAAGATTTTGACCCTTGTTCTGATTTCTATGGTAATGCCTATCTGAATAGACCAGAGGTTCAAAAGGCTCTCCATGCAAAACCTACAAATTGGAGCCATTGCAGTGAAGTTATTCGTTCCTGGAATGATAGTCCAGTTACCATCCTTCCCACCATCAATGGTGATACTGATGCAAGGGTTCCAGTAACATCTTCAAGATACTCAATCAATGCTCTCAAGCTTCCTATCAACTCTGCATGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGCAAGAGCTTTGACTTTGATTGAGTCATTCATCTATGGAGTCCTCCCACCTGTTTCACCATCAAATTAA 1440 0.3917 MKKVSLYACLLLNLSLLVIFPYSKASQADKLDELILSRSSQNPPKTFTWEVEDTLKTQSSSYVAAPQEGLRQADKIVTLPGQPYGVNFEHYSGYVTVDAEAGRELFYYFAESPNNPSTKPLILWLNGGPGCSSLGYGAFEELGPFRVNSDGKTLYRNPYAWNEVANVLFLESPAGVGFSHSNTTSDYDKSGDKRTAQDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLASTIIQNNKYFKQTIINLKGISIGNAWIDDATSLKGLFDYLWTHALNSDQTHELIEKYCDFTTENTSAICNNVTNRAIIEKGRIDFYNIYAPLCHDSSLKNSSTGYVTKDFDPCSDFYGNAYLNRPEVQKALHAKPTNWSHCSEVIRSWNDSPVTILPTINGDTDARVPVTSSRYSINALKLPINSAWRPWYSGNEVGGYVVGYKGLTFVTVRGAGHLVPSWQPARALTLIESFIYGVLPPVSPSN 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02599 479 ProSitePatterns Serine carboxypeptidases, histidine active site. 440 457 IPR033124 GO:0004185
Trre6g02599 479 ProSitePatterns Serine carboxypeptidases, serine active site. 220 227 IPR018202 GO:0004185
Trre6g02599 479 SUPERFAMILY alpha/beta-Hydrolases 76 471 IPR029058 -
Trre6g02599 479 Gene3D - 380 470 - -
Trre6g02599 479 FunFam Carboxypeptidase 381 470 - -
Trre6g02599 479 Gene3D alpha/beta hydrolase 71 329 IPR029058 -
Trre6g02599 479 Pfam Serine carboxypeptidase 80 469 IPR001563 GO:0004185|GO:0006508
Trre6g02599 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Trre6g02599 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Trre6g02599 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 440 453 IPR001563 GO:0004185|GO:0006508
Trre6g02599 479 PRINTS Carboxypeptidase C serine protease (S10) family signature 206 231 IPR001563 GO:0004185|GO:0006508
Trre6g02599 479 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 457 IPR001563 GO:0004185|GO:0006508
Trre6g02599 479 Gene3D - 347 379 - -
Trre6g02599 479 FunFam Carboxypeptidase 70 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02599 Trre-Chr6 22901558 22904138 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02599 355 470 Calmodulin-binding Proteins AT2G22960 27.820 3.67e-10 57.4