Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02598 ATGAAGAAGGTTTCTCTTTATGCTTGTTTATTACTCAACTTGAGTCTTTTGGTTATTTTTCCTTATAGCAAAGCTAGTCAAGCTGATAAACTTGATGAGTTGATTCTGTCTAGAAGCTCACAAAATCCTCCTAAGACTTTTACTTGGGAAGTGGAAGATACATTGAAAACACAATCTTCTTCTTATGTTGCAGCACCTCAAGAGGGATTAAGGCAAGCTGACAAGATTGTCACATTGCCTGGTCAACCTTATGGAGTGAATTTTGAACATTACTCTGGCTATGTCACTGTTGATGCTGAGGCTGGAAGAGAACTTTTCTATTATTTTGCTGAGTCTCCAAATAACCCTTCAACTAAACCTTTAATATTGTGGCTCAATGGAGGACCTGGTTGTTCCTCACTTGGGTATGGAGCCTTTGAGGAGCTAGGACCCTTCAGAGTAAACTCTGATGGAAAAACACTATACCGAAACCCATATGCTTGGAATGAAGTTGCAAATGTGCTCTTCTTAGAATCTCCAGCAGGAGTAGGATTTTCACACTCAAACACAACTTCTGACTATGACAAGTCAGGAGATAAGAGAACTGCCCAAGATGCTTATGTTTTCCTAATCAACTGGCTAGAGAGATTTCCAGAATACAAAACCAGAGATTTTTACATAACTGGAGAGAGTTATGCTGGTCACTATGTTCCTCAACTCGCATCCACTATTATTCAAAACAATAAATACTTTAAACAAACCATTATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCCACAAGTTTAAAGGGGTTATTTGATTACTTATGGACTCATGCTTTGAACTCAGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTACAGAAAATACTTCAGCCATATGTAACAATGTAACAAATAGGGCTATAATTGAGAAAGGACGCATCGACTTCTATAACATCTATGCTCCACTTTGTCATGACTCTTCTCTCAAAAATAGTTCAACTGGTTATGTAACTAAAGATTTTGACCCTTGTTCTGATTTCTATGGTAATGCCTATCTGAATAGACCAGAGGTTCAAAAGGCTCTCCATGCAAAACCTACAAATTGGAGCCATTGCAGTGAAGTTATTCGTTCCTGGAATGATAGTCCAGTTACCATCCTTCCCACCATCAAGTATCTCATCGATAGTGGCATTAAATTATGGATATACAGTGGTGATACTGATGCAAGGGTTCCAGTAACATCTTCAAGATACTCAATCAATGCTCTCAAGCTTCCTATCAACTCTGCATGGCGTCCATGGTATTCTGGAAATGAGGTTGGAGGATATGTGGTGGGATACAAAGGATTGACATTTGTTACAGTAAGAGGAGCAGGACATCTTGTTCCAAGCTGGCAACCAGCAAGAGCTTTGACTTTGATTGAGTCATTCATCTATGGAGTCCTCCCACCTGTTTCACCATCAAATTAA 1479 0.3901 MKKVSLYACLLLNLSLLVIFPYSKASQADKLDELILSRSSQNPPKTFTWEVEDTLKTQSSSYVAAPQEGLRQADKIVTLPGQPYGVNFEHYSGYVTVDAEAGRELFYYFAESPNNPSTKPLILWLNGGPGCSSLGYGAFEELGPFRVNSDGKTLYRNPYAWNEVANVLFLESPAGVGFSHSNTTSDYDKSGDKRTAQDAYVFLINWLERFPEYKTRDFYITGESYAGHYVPQLASTIIQNNKYFKQTIINLKGISIGNAWIDDATSLKGLFDYLWTHALNSDQTHELIEKYCDFTTENTSAICNNVTNRAIIEKGRIDFYNIYAPLCHDSSLKNSSTGYVTKDFDPCSDFYGNAYLNRPEVQKALHAKPTNWSHCSEVIRSWNDSPVTILPTIKYLIDSGIKLWIYSGDTDARVPVTSSRYSINALKLPINSAWRPWYSGNEVGGYVVGYKGLTFVTVRGAGHLVPSWQPARALTLIESFIYGVLPPVSPSN 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02598 492 ProSitePatterns Serine carboxypeptidases, serine active site. 220 227 IPR018202 GO:0004185
Trre6g02598 492 ProSitePatterns Serine carboxypeptidases, histidine active site. 453 470 IPR033124 GO:0004185
Trre6g02598 492 FunFam Carboxypeptidase 389 483 - -
Trre6g02598 492 Pfam Serine carboxypeptidase 80 482 IPR001563 GO:0004185|GO:0006508
Trre6g02598 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 453 466 IPR001563 GO:0004185|GO:0006508
Trre6g02598 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 206 231 IPR001563 GO:0004185|GO:0006508
Trre6g02598 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 157 169 IPR001563 GO:0004185|GO:0006508
Trre6g02598 492 PRINTS Carboxypeptidase C serine protease (S10) family signature 170 180 IPR001563 GO:0004185|GO:0006508
Trre6g02598 492 FunFam Carboxypeptidase 70 329 - -
Trre6g02598 492 SUPERFAMILY alpha/beta-Hydrolases 76 484 IPR029058 -
Trre6g02598 492 Gene3D - 347 380 - -
Trre6g02598 492 Gene3D - 389 483 - -
Trre6g02598 492 Gene3D alpha/beta hydrolase 71 329 IPR029058 -
Trre6g02598 492 PANTHER SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE 77 470 IPR001563 GO:0004185|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02598 Trre-Chr6 22901558 22904138 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02598 355 483 Calmodulin-binding Proteins AT2G22960 30.147 4.23e-13 66.2