Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02582 ATGGATGGCATAAGAAAGACCACTCTAGCTAAAGATTTATATGTTAAACCACGTTCTCACCCTCAATTTAATAAGCCAAAAGTAGAGTTTGTGAGTGGAGTCCAAAAACCTGAGAAGAACAAGCTTGTTTTCTTTGAAGGAAGTTCTTATCATTTTGATCTTGAAGACTTACTTAGAGCTTCAGCAGAAGTTCTTGGAAAAGTTAGCTATGGCACCTCATATAAGACTACATTATTACTGGAGGAGGCAACCACAGTTGTGGTGTTAAGGTTGAAAGAAGTTGTGGTAGGCAAAAAGGAGTTTGAACAACATATGGAGATTCTGGAAAGGGTCGGACAACACACAAACGTTGTGCCGCTTCGCTCTTATTATTTTTCGAAAGATGAAAAATTTATCGTTTATGACTATGTCCCAGCCGGCAACTTATCCACACTCTTGCATGGAAGTCAATCAGGTGGAAGAACTCCATTAGATTGGGACACAAGAGTAAAAATTTCTCTTGGAACTGCAAGAGGAATTGCGCACATCCATTCTGTCGGAGGCACCGAATTCACACATGGAAATATCATGTCCTCAAATGTTCTCCTCAACCAAGATAACGAAGGTTGTATTTCTGATTTTGGCCTGACCTCACTTATCAATGTTCCTGCAAAACCTTCTGGAGTTGCCGGTTATCACGCTCCTGAGGTGATTGAAACTGGTATGCACTCTCATAAATCAGATGTCTACAGCTTTGGTATCCTCCTGCTCGAATTGGTTACAGGTAAATCGCCTCTACAATCTCATGGACACGATGATATGCACGTTGATCTCCCTAGGTGGGTTTCCTCTGTTGTTCGGGAGAAATGGACAGCCAAGGTTTACAATGTTGAGCTAATGAGGTACCAAAACTTGGAAGAAGAAATGGTGCAAATGTTGCAAATTTCCATGACATGTGTAGCAATGAGGCCTGACGCGAGACCTAACATGGTAGAAGTGGTAAGAATGATCGAAGAGATCCGGCAATCTGACTTAGAGTCAGAGAGCCGACTGTCTTCCAAAGAGAATAAATCTAAGGACTCAAATGTTCAGATTCCATAG 1080 0.4157 MDGIRKTTLAKDLYVKPRSHPQFNKPKVEFVSGVQKPEKNKLVFFEGSSYHFDLEDLLRASAEVLGKVSYGTSYKTTLLLEEATTVVVLRLKEVVVGKKEFEQHMEILERVGQHTNVVPLRSYYFSKDEKFIVYDYVPAGNLSTLLHGSQSGGRTPLDWDTRVKISLGTARGIAHIHSVGGTEFTHGNIMSSNVLLNQDNEGCISDFGLTSLINVPAKPSGVAGYHAPEVIETGMHSHKSDVYSFGILLLELVTGKSPLQSHGHDDMHVDLPRWVSSVVREKWTAKVYNVELMRYQNLEEEMVQMLQISMTCVAMRPDARPNMVEVVRMIEEIRQSDLESESRLSSKENKSKDSNVQIP 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02582 359 ProSiteProfiles Protein kinase domain profile. 59 333 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02582 359 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 137 344 - -
Trre6g02582 359 PANTHER OS05G0588300 PROTEIN 32 346 - -
Trre6g02582 359 MobiDBLite consensus disorder prediction 337 359 - -
Trre6g02582 359 SUPERFAMILY Protein kinase-like (PK-like) 63 337 IPR011009 -
Trre6g02582 359 Gene3D Transferase(Phosphotransferase) domain 1 137 357 - -
Trre6g02582 359 FunFam pollen receptor-like kinase 1 28 136 - -
Trre6g02582 359 Gene3D Phosphorylase Kinase; domain 1 27 136 - -
Trre6g02582 359 Pfam Protein tyrosine and serine/threonine kinase 63 329 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02582 Trre-Chr6 22746037 22747116 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02582 25 358 Receptor kinase-like Gene Family AT5G58300 67.365 8.64e-164 471
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre6g02582 PK_Tyr_Ser-Thr 8.6e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02582 - - gmx:100796171 515.768