Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02577 ATGGTTGTTAAAGTAAAGAGAGAAAATCTTGAAGCATGCATGACATGTCCTCTTTGTCAAAAGCTTCTCAAAGATGCTACCACCATTTCTCTATGTCTTCACACTTTTTGCAGGAAGTGTATATATGAGAAGCTTTCAGATGAAGAGGTGGATTGTTGTCCGGTATGCGAAATTGATCTGGGAATCCTTCCGGTCGAAAAGCTCAGGCCTGATCACAATCTGCAAGATATTAGGACCAAAATATTCCCTTTTAAACATAAAAAGGTTCAAGCCGAAGAAGTTGTTCCCTCAACACCCCTGCCTGCAAAAAGGAAGGAAAGATCACTTTCATCATTGGTGGTTAGTGCTCCCAAAGTTTCAACACATATTAGCTTTACAGGAAAGAGAACAAAAAGTGGTACAAGAAAGGCTGCTGCTTTACGTGGCTGCAGTTTTACCCCTGAAGAATCTATAAAAAAAGAAGAAGCACACGACGAAGATAATCTGAATTCTTCTATAGGTGAGACTTCTATGAAGCATAGATCCAATGAAGATTCAGACAACAATATTGACCTTACAGAAGGGAAGGCTGATCTCTGGACGCCCTTGAACTGTCTTGTTGAAGCGGCCAATAGAACAAAGCCCTCCAGGTCAAATTTACAAGGGACTGCCAAATTAGAGTCTCCAATTACTCCTCATGGTGGACTAGTGATGTCAGAAACTACAACTAAATCGGATCCACCTACATCTGTCCAGAGTGAATTACATGTGCCTAAAACCAAAAACAAGAGTAATGGACATAAAAGAAAGTTTGGAGATGACAAGGGCGGAAACACCTTGCCTTCAGGACCAGTGAAGCGAAAACGGCCGCGTCCTTCGAATCAGAAGAGAGCAGCAGCATCTGAGATGTCTGCTTCAGCCCAACTCATGTTAGATGCACCAGGGAGCAGGTGCAACAGGAAAAACAGTCCTATTTGGTTTACATTAGTTGCTTCGGAAGACCAGAATGGAGAAGTTTCCTTGCCACAGATCTCGGCTTGCTATTTAAGAATAAAGGATGGTACTGTACCCGTCTCATTTATTCAAAAGTACCTTATGAAGAAACTTAATCTTGCTAGCGAAGCACAGGTGGAAATAATGTGCCGGGGTCAGCCTGTGCTACCATCTTTGCAAATGCATAACTTAGTAGATTTGTGGTTCTGCACATCATTAACATCAAAAAAGCTATCGGCATCTGTGGGATCTTCGGCTAAGGACTTTGTGATGGCTTTATCGTATTGTCGAAAGACCTTACCTCATTGA 1281 0.4208 MVVKVKRENLEACMTCPLCQKLLKDATTISLCLHTFCRKCIYEKLSDEEVDCCPVCEIDLGILPVEKLRPDHNLQDIRTKIFPFKHKKVQAEEVVPSTPLPAKRKERSLSSLVVSAPKVSTHISFTGKRTKSGTRKAAALRGCSFTPEESIKKEEAHDEDNLNSSIGETSMKHRSNEDSDNNIDLTEGKADLWTPLNCLVEAANRTKPSRSNLQGTAKLESPITPHGGLVMSETTTKSDPPTSVQSELHVPKTKNKSNGHKRKFGDDKGGNTLPSGPVKRKRPRPSNQKRAAASEMSASAQLMLDAPGSRCNRKNSPIWFTLVASEDQNGEVSLPQISACYLRIKDGTVPVSFIQKYLMKKLNLASEAQVEIMCRGQPVLPSLQMHNLVDLWFCTSLTSKKLSASVGSSAKDFVMALSYCRKTLPH 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02577 426 Pfam Zinc finger, C3HC4 type (RING finger) 16 56 - -
Trre6g02577 426 SUPERFAMILY RING/U-box 10 80 - -
Trre6g02577 426 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 2 424 IPR044807 GO:0004842
Trre6g02577 426 ProSitePatterns Zinc finger RING-type signature. 32 41 IPR017907 -
Trre6g02577 426 Gene3D - 299 402 - -
Trre6g02577 426 ProSiteProfiles Zinc finger RING-type profile. 16 57 IPR001841 -
Trre6g02577 426 MobiDBLite consensus disorder prediction 147 162 - -
Trre6g02577 426 MobiDBLite consensus disorder prediction 205 219 - -
Trre6g02577 426 MobiDBLite consensus disorder prediction 147 185 - -
Trre6g02577 426 MobiDBLite consensus disorder prediction 205 298 - -
Trre6g02577 426 CDD RING-HC_PCGF 14 57 - -
Trre6g02577 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 106 IPR013083 -
Trre6g02577 426 SMART ring_2 16 56 IPR001841 -
Trre6g02577 426 MobiDBLite consensus disorder prediction 228 252 - -
Trre6g02577 426 MobiDBLite consensus disorder prediction 171 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02577 Trre-Chr6 22697403 22704244 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02577 1 345 C3H Transcription Factor Family AT2G30580 43.562 1.44e-83 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02577 K16277 - gmx:100783999 650.588