Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02552 ATGGAAAAACCCCAACCCAGGTTCATCTCCTTCATTTCTATATCCTTCTTTTTCACCTTACTATCTTCAATCCCATCCACAACTGAATCCAAATGCACAAAAGGCTGCCCCCTTGCTTTAGCCTCCTTCTATGCAGTCAAAGGCTCCAACCTCACATATATTTCAAGTATTATGAAATCCTCAATTCTTACAAGACCAGAAGACATAGTTGATTACAACCACGACACAATACCAAATAAAGACAGTTTTTTCGGTGATCAAAGAATCAACCTTCCATTTCCATGTGATTGCATAGAGAACGAGTTTCTCGGTCACACGTTTAGTTACGATGTTCAAAAGGCTGACACGTATGAAACTGTTGCTGCAAGCAACTACGCTAACCTAACTAATGTTCAATGGTTGCGGAGGTTTAATAGTTATGAACCTAATAATATTCCTGATACTGGAACGTTGAATGTTACTGTTAATTGTTCTTGTGGTGATAGTGATGTTGGAAATTATGGGTTGTTTGTTACTTATCCTCTTAGACCTGGTGAGACTTTGGGGACGGTTGCGAATTCGATTAAACTTGATTCGGCGGTGCTGGAGAGGTATAATCCTGGTGTGAATTTCAACCAAGGGAGTGGTCTTGTTTTTATTCCGGGAAAAGATCAGAATGGTAGCTTTGTGTTTTTGAGTTCCAGTTCAGGAGGTCTTGCTGGTGGGGCTATTGCTGGAATAGCTGTTGGAATTGTGGTTGTTCTGTTATTGGCAGCTGGTATGTATTTTGGATACTACCAGAAGAAGAAGATACAGAAGGAGGGACTTTTTTCGCGAGATTCCACTGCACTCTTTTCTCAAGATGGGAAGGATGAAAATTCTCGTAGTTCCGCAAATGCAATGCCGGGGGCTGGTGTGATGACTGGCATAACAGTCGACAAATCAGTTGAATTCTCATATGATGAACTAGCGGCTGCCTCAGATAACTTTAGCATGGCTAATAAAATTGGTCAAGGAGGTTTTGGCTCTGTCTATTACGCAGAATTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCAACAAAGGAATTTCTTGCTGAATTGAAAGTCCTAACACGTGTTCATCATCTTAACTTGGTGCGGTTGATTGGATATAGTATTGAGGGCTCTCTTTTCCTTGTCTATGAGTACATTGAGAATGGAAACTTGAGTCAGCATTTGCGTGGTTCAGGTAGAGATCCACTGCCATGGGCTACACGTGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATCCATGAGCATACAGTGCCTGTATATATTCATCGTGACATAAAGCCAGCAAATATATTGATAGACAAAAACTTCCGGGGAAAGGTTGCTGATTTTGGATTGACCAAACTGACGGAAGTTGGAAGCTCGTCGCTTCCCACTGGTCGTCTTGTTGGCACATTCGGATACATGCCACCAGAGTATGCTCAATATGGAGACGTTTCCCCCAAAGTAGATGTTTATGCCTTTGGCGTTGTTCTTTATGAACTTATTTCGGCAAAGGAAGCAATTGTCAAATCGAGCGAATCTATTACTGCAGACTCAAAGGGACTTGTCGGTCTGTTTGAAGGAGTTCTTAGTCAGCCCGATCCTACAGAAGATCTTCGCAAACTAGTGGATCCAAGGCTTGGAGATAACTACCCTGTAGATTCTGTTCGCAAGATGGCTCAACTAGCGAAAGCGTGTACGCAGGAAAATCCTCAACTGCGTCCGAGTATGAGATCCATTGTAGTTGCTCTTATGACACTTTCTTCATCTACGGACGATTGGGATGTCGGCTCCTTTTACGAAAATCAAAATCTTGTGAATCTCATGTCAGGAAGATAG 1872 0.4231 MEKPQPRFISFISISFFFTLLSSIPSTTESKCTKGCPLALASFYAVKGSNLTYISSIMKSSILTRPEDIVDYNHDTIPNKDSFFGDQRINLPFPCDCIENEFLGHTFSYDVQKADTYETVAASNYANLTNVQWLRRFNSYEPNNIPDTGTLNVTVNCSCGDSDVGNYGLFVTYPLRPGETLGTVANSIKLDSAVLERYNPGVNFNQGSGLVFIPGKDQNGSFVFLSSSSGGLAGGAIAGIAVGIVVVLLLAAGMYFGYYQKKKIQKEGLFSRDSTALFSQDGKDENSRSSANAMPGAGVMTGITVDKSVEFSYDELAAASDNFSMANKIGQGGFGSVYYAELRGEKAAIKKMDMQATKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGRDPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKPANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKSSESITADSKGLVGLFEGVLSQPDPTEDLRKLVDPRLGDNYPVDSVRKMAQLAKACTQENPQLRPSMRSIVVALMTLSSSTDDWDVGSFYENQNLVNLMSGR 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02552 623 CDD STKc_IRAK 329 592 - -
Trre6g02552 623 ProSitePatterns Protein kinases ATP-binding region signature. 329 351 IPR017441 GO:0005524
Trre6g02552 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 438 450 IPR008271 GO:0004672|GO:0006468
Trre6g02552 623 Gene3D Phosphorylase Kinase; domain 1 299 393 - -
Trre6g02552 623 Gene3D Transferase(Phosphotransferase) domain 1 394 614 - -
Trre6g02552 623 SUPERFAMILY Protein kinase-like (PK-like) 305 595 IPR011009 -
Trre6g02552 623 FunFam PTI1-like tyrosine-protein kinase 3 394 609 - -
Trre6g02552 623 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 609 IPR044812 GO:0019199|GO:0045087
Trre6g02552 623 ProSiteProfiles Protein kinase domain profile. 323 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02552 623 FunFam LysM receptor kinase 2 302 393 - -
Trre6g02552 623 SMART serkin_6 323 597 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02552 623 Pfam Protein tyrosine and serine/threonine kinase 325 594 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02552 Trre-Chr6 22443856 22459601 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02552 15 623 Receptor kinase-like Gene Family AT3G21630 59.451 0.0 713
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre6g02552 PK_Tyr_Ser-Thr 8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02552 - K13429 gmx:100777781 941.028