Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02550 ATGGAAAAACCCCAACCCAGGTTCATCTCCTTCATTTCTATATCCTTCTTTTTCACCTTACTATCTTCAATCCCATCCACAACTGAATCCAAATGCACAAAAGGCTGCCCCCTTGCTTTAGCCTCCTTCTATGCAGTCAAAGGCTCCAACCTCACATATATTTCAAGTATTATGAAATCCTCAATTCTTACAAGACCAGAAGACATAGTTGATTACAACAACCACGACACAATACCAAGTAAAGACAGTTTTTTCGGTGATCACAGAATCAACCTTCCATTTCCATGTGATTGCATAGAGAACGAGTTTCTCGGTCACACGTTTAGTTACGATGTTCAAAAGGCTGACACGTATGAAACTGTTGCTGCAAGCAACTACGCTAACCTAACTAATGTTCAATGGTTGCGGAGGTTTAATAGTTATGAACCTAATAATATTCCTGATACTGGAACGTTGAATGTTACTGTTAATTGTTCTTGTGGTGATAGTGATGTTGGAAATTATGGGTTGTTTGTTACTTATCCTCTTAGACCTGGTGAGACTTTGGGGACGGTTGCGAATTCGATTAATCTTGATTCGGCGTTGCTGCGGAGGTATAATCCTGGTGTGAATTTCAACCAAGGGAGTGGTCTTGTTTTTATTCCGGGAAAAGATCAGAATGGTAGCTTTGTGTTTTTGAGTTCCAGTTCAGGAGGTCTTGCTGGTGGGGCTATTGCTGGAATAGCTGTTGGAATTGTGGTTGTTCTGTTATTGGCAGCTGGTATGTATTTTGGATACTACCGGAAGAAGAAGATACAGAAGGAGGGACTTTTTTCGCGAGATTCCACTGCACTCTTTTCTCAAGATGGGAAGGATGAAAATTCTCGTAGTTCCGCAAATGCAATGCCGGGGGCTGGTGTGATGACTGGCATAACAGTCGACAAATCAGTTGAATTCTCATATGATGAACTAGCGGCTGCCTCAGATAACTTTAGCATGGCTAATAAAATTGGTCAAGGAGGTTTTGGCTCTGTCTATTACGCAGAATTGAGGGGAGAGAAAGCTGCAATCAAGAAGATGGATATGCAAGCAACAAAGGAATTTCTTGCTGAATTGAAAGTCCTAACACGTGTTCATCATCTTAACTTGGTGCGGTTGATTGGATATAGTATTGAGGGCTCTCTTTTCCTTGTCTATGAGTACATTGAGAATGGAAACTTGAGTCAGCATTTGCGTGGTTCAGGTAGAGATCCACTGCCATGGGCTACACGTGTGCAGATTGCTTTGGATTCTGCCAGAGGTCTTGAATATATCCATGAGCATACAGTGCCTGTATATATTCATCGTGACATAAAGCCAGCAAATATATTGATAGACAAAAACTTCCGGGGAAAGGTTGCTGATTTTGGATTGACCAAACTGACGGAAGTTGGAAGCTCGTCGCTTCCCACTGGTCGTCTTGTTGGCACATTCGGATACATGCCACCAGAGTATGCTCAATATGGAGACGTTTCCCCCAAAGTAGATGTTTATGCCTTTGGCGTTGTTCTTTATGAACTTATTTCGGCAAAGGAAGCAATTGTCAAATCGAGCGAATCTATTACTGCAGACTCAAAGGGACTTGTCGGTCTGTTTGAAGGAGTTCTTAGTCAGCCCGATCCTACAGAAGATCTTCGCAAACTAGTGGATCCAAGGCTTGGAGATAACTACCCTGTAGATTCTGTTCGCAAGATGGCTCAACTAGCGAAAGCGTGTACGCAGGAAAATCCTCAACTGCGTCCGAGTATGAGATCCATTGTAGTTGCTCTTATGACACTTTCTTCATCTACGGACGATTGGGATGTCGGCTCCTTTTACGAAAATCAAAATCTTGTGAATCTCATGTCAGGAAGATAG 1875 0.4245 MEKPQPRFISFISISFFFTLLSSIPSTTESKCTKGCPLALASFYAVKGSNLTYISSIMKSSILTRPEDIVDYNNHDTIPSKDSFFGDHRINLPFPCDCIENEFLGHTFSYDVQKADTYETVAASNYANLTNVQWLRRFNSYEPNNIPDTGTLNVTVNCSCGDSDVGNYGLFVTYPLRPGETLGTVANSINLDSALLRRYNPGVNFNQGSGLVFIPGKDQNGSFVFLSSSSGGLAGGAIAGIAVGIVVVLLLAAGMYFGYYRKKKIQKEGLFSRDSTALFSQDGKDENSRSSANAMPGAGVMTGITVDKSVEFSYDELAAASDNFSMANKIGQGGFGSVYYAELRGEKAAIKKMDMQATKEFLAELKVLTRVHHLNLVRLIGYSIEGSLFLVYEYIENGNLSQHLRGSGRDPLPWATRVQIALDSARGLEYIHEHTVPVYIHRDIKPANILIDKNFRGKVADFGLTKLTEVGSSSLPTGRLVGTFGYMPPEYAQYGDVSPKVDVYAFGVVLYELISAKEAIVKSSESITADSKGLVGLFEGVLSQPDPTEDLRKLVDPRLGDNYPVDSVRKMAQLAKACTQENPQLRPSMRSIVVALMTLSSSTDDWDVGSFYENQNLVNLMSGR 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02550 624 Gene3D Phosphorylase Kinase; domain 1 300 394 - -
Trre6g02550 624 ProSitePatterns Serine/Threonine protein kinases active-site signature. 439 451 IPR008271 GO:0004672|GO:0006468
Trre6g02550 624 FunFam PTI1-like tyrosine-protein kinase 3 395 610 - -
Trre6g02550 624 SMART serkin_6 324 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02550 624 Pfam Protein tyrosine and serine/threonine kinase 326 595 IPR001245 GO:0004672|GO:0006468
Trre6g02550 624 SUPERFAMILY Protein kinase-like (PK-like) 306 596 IPR011009 -
Trre6g02550 624 ProSiteProfiles Protein kinase domain profile. 324 599 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre6g02550 624 FunFam LysM receptor kinase 2 303 394 - -
Trre6g02550 624 ProSitePatterns Protein kinases ATP-binding region signature. 330 352 IPR017441 GO:0005524
Trre6g02550 624 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 14 610 IPR044812 GO:0019199|GO:0045087
Trre6g02550 624 Gene3D Transferase(Phosphotransferase) domain 1 395 615 - -
Trre6g02550 624 CDD STKc_IRAK 330 593 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02550 Trre-Chr6 22421518 22429184 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02550 15 624 Receptor kinase-like Gene Family AT3G21630 59.612 0.0 711
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Trre6g02550 PK_Tyr_Ser-Thr 8e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02550 - K13429 gmx:100777781 938.332