Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02545 ATGTCTTCTTTGTTTTCCATGTACCAATCCAAAGGGGTGGATCAAATTCAAAAGAATGAAACAAAAGGTTATAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAGCAAGAAGATAGTTATGAAGATTGTAACTTAATGTTGGAGAAGAAAAGAAGACTTGGTCATGTTCAAGTAAAAGCCTTAGAAAAGAGTTTTGAGTTGGATAATAAGTTAGAGCCAGAGAGAAAAGTTAAGTTAGCTGAAGAATTAGGCTTGCAACCTAGACAAGTTTCAATTTGGTTCCAAAATCGTCGAGCTCGTTCGAAAACCAAACAATTAGAAAGAGATTATGGTGTTCTTAAGTCCAATTTCGATGTTCTTAAGGTTGAGTATAGTAATCTTCAACAAGAGAATGAAGCACTTACCATAAAGTTAAGAGAGTTGAAAGAAAAATTGTTAAGAGTTGAAAATAATGAGTTAGAGAAAGAAGAATGTCCAATTTCAAGAGGTAGAGAAAGAGGAGGTTCAGACAGCAATTCAAGTGGTGTGATTAAGGAAGAAATTAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCAAGTTCAATGATAAACTTGGTTCATTATTATGATTCAAAAGGTTCACCTGAGAGAGCTTTTCATAATCATAATCACTTTATGAGAATGGAGGAGCAAAATTTCTTTAGTAATAGTGAATTATGCAATTTCTTTTCTGTTGATCAATCTCCTACTTTGTAA 747 0.3293 MSSLFSMYQSKGVDQIQKNETKGYSEEFQAMLDRLEQEDSYEDCNLMLEKKRRLGHVQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENEALTIKLRELKEKLLRVENNELEKEECPISRGRERGGSDSNSSGVIKEEISNVDSPLCFNGSLPSSMINLVHYYDSKGSPERAFHNHNHFMRMEEQNFFSNSELCNFFSVDQSPTL 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02545 248 FunFam homeobox-leucine zipper protein ATHB-6-like 53 99 - -
Trre6g02545 248 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Trre6g02545 248 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 31 179 IPR045224 GO:0003700
Trre6g02545 248 SUPERFAMILY Homeodomain-like 50 116 IPR009057 -
Trre6g02545 248 ProSitePatterns 'Homeobox' domain signature. 80 103 IPR017970 GO:0000981|GO:0006355
Trre6g02545 248 Gene3D - 49 112 - -
Trre6g02545 248 Coils Coil 118 152 - -
Trre6g02545 248 CDD homeodomain 50 106 IPR001356 GO:0003677
Trre6g02545 248 PRINTS Lambda-repressor HTH signature 85 101 IPR000047 GO:0003677
Trre6g02545 248 PRINTS Lambda-repressor HTH signature 76 85 IPR000047 GO:0003677
Trre6g02545 248 Pfam Homeobox associated leucine zipper 105 146 IPR003106 GO:0006355|GO:0043565
Trre6g02545 248 Pfam Homeodomain 51 103 IPR001356 GO:0003677
Trre6g02545 248 SMART HOX_1 48 109 IPR001356 GO:0003677
Trre6g02545 248 MobiDBLite consensus disorder prediction 157 177 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02545 Trre-Chr6 22346335 22347351 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02545 27 146 Homeobox Transcription Factor Family AT5G65310 64.567 3.56e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre6g02545 Homeodomain 2.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02545 K09338 - cave:132184564 235.728