Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02544 ATGAAAAGGTTCAATAATTCAGAATCTATGTCTTCTTTGTTTTCCATGTACCAATCCAAAGGGGTGGATCAAATTCAAAAGAATGAAACAAAAGGTTATAGTGAAGAATTTCAAGCAATGTTAGATAGATTGGAGCAAGAAGATAGTTATGAAGATTGTAACTTAATGTTGGAGAAGAAAAGAAGACTTGGTCATGTTCAAGTAAAAGCCTTAGAAAAGAGTTTTGAGTTGGATAATAAGTTAGAGCCAGAGAGAAAAGTTAAGTTAGCTGAAGAATTAGGCTTGCAACCTAGACAAGTTTCAATTTGGTTCCAAAATCGTCGAGCTCGTTCGAAAACCAAACAATTAGAAAGAGATTATGGTGTTCTTAAGTCCAATTTCGATGTTCTTAAGGTTGAGTATAGTAATCTTCAACAAGAGAATGAAGCACTTACCATAAAGTTAAGAGAGTTGAAAGAAAAATTGTTAAGAGTTGAAAATAATGAGTTAGAGAAAGAAGAATGTCCAATTTCAAGAGGTAGAGAAAGAGGAGGTTCAGACAGCAATTCAAGTGGTGTGATTAAGGAAGAAATTAGTAATGTTGATTCTCCTTTGTGTTTCAATGGATCTTTGCCAAGTTCAATGATAAACTTGGTTCATTATTATGATTCAAAAGGTTCACCTGAGAGAGCTTTTCATAATCATAATCACTTTATGAGAATGGAGGAGCAAAATTTCTTTAGTAATAGTGAATTATGCAATTTCTTTTCTGTTGATCAATCTCCTACTTTGTAA 774 0.3269 MKRFNNSESMSSLFSMYQSKGVDQIQKNETKGYSEEFQAMLDRLEQEDSYEDCNLMLEKKRRLGHVQVKALEKSFELDNKLEPERKVKLAEELGLQPRQVSIWFQNRRARSKTKQLERDYGVLKSNFDVLKVEYSNLQQENEALTIKLRELKEKLLRVENNELEKEECPISRGRERGGSDSNSSGVIKEEISNVDSPLCFNGSLPSSMINLVHYYDSKGSPERAFHNHNHFMRMEEQNFFSNSELCNFFSVDQSPTL 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02544 257 Coils Coil 127 161 - -
Trre6g02544 257 CDD homeodomain 59 115 IPR001356 GO:0003677
Trre6g02544 257 ProSitePatterns 'Homeobox' domain signature. 89 112 IPR017970 GO:0000981|GO:0006355
Trre6g02544 257 SMART HOX_1 57 118 IPR001356 GO:0003677
Trre6g02544 257 Pfam Homeodomain 60 112 IPR001356 GO:0003677
Trre6g02544 257 MobiDBLite consensus disorder prediction 166 186 - -
Trre6g02544 257 PRINTS Lambda-repressor HTH signature 85 94 IPR000047 GO:0003677
Trre6g02544 257 PRINTS Lambda-repressor HTH signature 94 110 IPR000047 GO:0003677
Trre6g02544 257 SUPERFAMILY Homeodomain-like 59 125 IPR009057 -
Trre6g02544 257 ProSiteProfiles 'Homeobox' domain profile. 54 114 IPR001356 GO:0003677
Trre6g02544 257 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 29 188 IPR045224 GO:0003700
Trre6g02544 257 Gene3D - 58 121 - -
Trre6g02544 257 Pfam Homeobox associated leucine zipper 114 155 IPR003106 GO:0006355|GO:0043565
Trre6g02544 257 FunFam homeobox-leucine zipper protein ATHB-6-like 62 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02544 Trre-Chr6 22346308 22347351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02544 36 155 Homeobox Transcription Factor Family AT5G65310 64.567 4.35e-47 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Trre6g02544 Homeodomain 2.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02544 K09338 - cave:132184564 246.899