Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02540 ATGCAATTTGATACGGAAGATCACGCATATAGATTTTACAATGTATATGCTGGCTTTGCTGGTTTTAGCATTAGAAGAGATTGGAGAAACAAAAGCAAATTAGATAATAAGACAGTGATGTCTCGAAAGTTTGTGTGTTTTAAAGAAGGATTTAAGAGGACCAAAGACGATTATGATGAAAAAGTGTCTCGTAAAGATATCAGAACTGGATGTTTAGCACATGTTGTCATCGGTCGGGAATTGAGTGGAAAATATGTTGTTACATCTTTTGTAAAAGACCATAATCATGAGCTTGCATCCCCTAGAAGTAAGCATAAATTACCATCACAAAGGAGGGTTTTTGCCGCTCAAGCAGCTGAGGTAGAAATTGCAAACCGATCTGGTATACGCCAAAAATTGATTTTTGAGTTTATGAGTCAACAGTTGGAGGGAGGGAGAACGTTGGCTACACTTCTAAAGATATTAGCAATCATTTAA 477 0.3669 MQFDTEDHAYRFYNVYAGFAGFSIRRDWRNKSKLDNKTVMSRKFVCFKEGFKRTKDDYDEKVSRKDIRTGCLAHVVIGRELSGKYVVTSFVKDHNHELASPRSKHKLPSQRRVFAAQAAEVEIANRSGIRQKLIFEFMSQQLEGGRTLATLLKILAII 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02540 158 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 1 139 - -
Trre6g02540 158 Pfam FAR1 DNA-binding domain 11 99 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02540 Trre-Chr6 22315349 22315825 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre6g02540 FAR1 1.3e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02540 - K17604 tpra:123914859 261.536