Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02538 ATGGATCAAGAGATTGAAGTTTCACCATTTTTCCTCTGTCCAATTTCATTACAACTCATGAAAGATCCTGTTACTGTCTCAACAGGCATAACCTATGACAGACAAAGCATTGAAAAATGGCTATTTTCATCTCAAAATAAAACATGTCCTGTCACTAAACAACAACTCTCACATGATGATAATAATCTCATTATTCTCACACCAAATCACAATCTTCGCAGACACATTCAAGCATGGTGCACTATTAACACTTCTTATGGAATTCAAAGAATTCCAACTCCAAAACCACCAACAACAAAAACCCTTATAGAGAAACATCTCAAAGATGCTTCTTCTGATTCTCCTCATTTGCTTATTCAATCCCTCAGAAACCTTAAAACAATTGCGTCCGAGAGCGAAACTAATCGAAGATGTATCGAATCTGCCGGTGCTGTCGAATTCTTAGCATCTGTAGTAACAAAAAACAACACAGGTTCTTCATCTTCATGTTCAACAGCAGAATTTGTTCTTGATGATGATGATGTTGAAGGTTTTGCTTTTGAGTTCAGAGTAGATGCTGAAGATGAAGCTATAAACATTCTTTACAATCTTCATTTAACAGAACAAGGTTTAATAACTCTCTTAAACTTCAAAAATGGAGAATTTTTAGACTCTTTATTGAGATTAATGCAAAAGGGTAACTACGATTCAAGAACATATTCAGTTTATCTATTGAAATCTATGTCAAAAGTTTCTGATCCATCAAAACTATCGAATCTAAACACCGAGTTTTTCGTCGAATTAGTCCAGCTACTCAAAGATCAAATATCAAAAAAGGCATCAAAAGCAACACTACAAACACTAATTCAACTCGTCGAATTCGGAAGAAACAGAATAAGAGCAGTGGAATCAGGTTGTGTTACTGTTTTAATAGAACTTCTTCTTGATTGCAAAGAAAGAAAACCATGTGAGATGATTTTAGTGCTTTTGGAGATGTTATGTCAATGTGCTGATGGAAGATTAGAGTTATTAAGCCATGGTTGTGGATTAGCTATTGTTTCAAAGAAGATTCTAAGGGTTTCAACTTTGGCTAATGATAGAGCAGTGAGAATTCTTCTATCTGTTTCAAGATTTTCGGCAACACATTTTGTTGTTCAAGAAATGTTGCAAATAGGTGTTGTTGCTAAGCTTTGTTTGGTTCTTCAAGTTGATAGTGGAAATAAGGCTAAGGAGAAAGCAAAAGAGATACTTAAATTGCATGCAAATTCTTGGAGTAATTCTCATTGTATACCTTTTAATTTACTTGCTTCATACCCAACAAGTGGGTGA 1308 0.3456 MDQEIEVSPFFLCPISLQLMKDPVTVSTGITYDRQSIEKWLFSSQNKTCPVTKQQLSHDDNNLIILTPNHNLRRHIQAWCTINTSYGIQRIPTPKPPTTKTLIEKHLKDASSDSPHLLIQSLRNLKTIASESETNRRCIESAGAVEFLASVVTKNNTGSSSSCSTAEFVLDDDDVEGFAFEFRVDAEDEAINILYNLHLTEQGLITLLNFKNGEFLDSLLRLMQKGNYDSRTYSVYLLKSMSKVSDPSKLSNLNTEFFVELVQLLKDQISKKASKATLQTLIQLVEFGRNRIRAVESGCVTVLIELLLDCKERKPCEMILVLLEMLCQCADGRLELLSHGCGLAIVSKKILRVSTLANDRAVRILLSVSRFSATHFVVQEMLQIGVVAKLCLVLQVDSGNKAKEKAKEILKLHANSWSNSHCIPFNLLASYPTSG 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02538 435 SUPERFAMILY RING/U-box 5 85 - -
Trre6g02538 435 SUPERFAMILY ARM repeat 111 399 IPR016024 -
Trre6g02538 435 ProSiteProfiles U-box domain profile. 6 86 IPR003613 GO:0004842|GO:0016567
Trre6g02538 435 Gene3D - 99 421 IPR011989 -
Trre6g02538 435 PANTHER WDSAM1 PROTEIN 3 424 IPR045185 GO:0061630
Trre6g02538 435 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 90 IPR013083 -
Trre6g02538 435 Pfam U-box domain 8 81 IPR003613 GO:0004842|GO:0016567
Trre6g02538 435 SMART Ubox_2 10 79 IPR003613 GO:0004842|GO:0016567
Trre6g02538 435 CDD RING-Ubox_PUB 9 60 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02538 Trre-Chr6 22299615 22300922 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02538 1 432 U-box Gene Family AT3G52450 53.061 2.25e-156 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02538 - - tpra:123902305 753.051