Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02534 ATGAAAGGAACAACGAGTTTGATATCATTCTTCTCGCTCTCGCGCTACCGTATTCTTCACTCTCAATACCAATACCGATTCTTCAACTCTTCTTCTTCTTCTTCACCATCATTATCATCATCATCACCACCTTCCTCTAACAAGCTATTCGTAGGAGGATTATCATGGTCAGTTGATGAAAAATCTCTCAAAGATGCTTTCTCTTCCTTTGGAGATGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGTAGAGCTAGAGGATTCGGGTTTGTCATATTTTCAAATGAAGATGATGCAAAATATGCAAAAGATGCTATGGACGGAAAGGCATTGTTAGGTAGACCGTTGAAGATAAATTTTGCTCTCGAGAAGGCCCGTGGTGGACCTGTTGTAGTTCCTCGGTTTTCAGATAATGGACGCTTTAACAGGCACTGA 441 0.4082 MKGTTSLISFFSLSRYRILHSQYQYRFFNSSSSSSPSLSSSSPPSSNKLFVGGLSWSVDEKSLKDAFSSFGDVTEVRIVYDKDSGRARGFGFVIFSNEDDAKYAKDAMDGKALLGRPLKINFALEKARGGPVVVPRFSDNGRFNRH 146
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02534 146 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 47 125 IPR000504 GO:0003723
Trre6g02534 146 PANTHER GEO13361P1-RELATED 32 146 - -
Trre6g02534 146 SUPERFAMILY RNA-binding domain, RBD 34 132 IPR035979 GO:0003676
Trre6g02534 146 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 119 IPR000504 GO:0003723
Trre6g02534 146 CDD RRM2_NsCP33_like 48 123 - -
Trre6g02534 146 SMART rrm1_1 48 121 IPR000504 GO:0003723
Trre6g02534 146 Gene3D - 21 146 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02534 Trre-Chr6 22263467 22264091 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02534 45 126 C2H2 Transcription Factor Family AT2G19380 36.585 8.40e-13 62.8