Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre6g02532 ATGAAAGGGACAACGAGTTTGATATCACTGTTCTCGCTCTCGCGCCACCGTATTCTTCGCTCTCAATACCGATTCTTCAACTCTTCTTCTTCTTCTTCTTCACCATCATTATCATCATCATCACCTTCCTCTAACAAGCTATTCGTAGGAGGAATATCATGGTCAGTTGATGAAAAATCTCTCAAAGATGCTTTCTCTTCCTTTGGATATGTCACTGAAGTGAGGATAGTGTATGATAAAGACAGTGGTAGAGCTAGAGGATTCGGGTTTGTCATATTTTCAAATGAAGATGATGCAAAATCTGCAAAAGATGCTATGGATGGAAAGGCATTGTTAGGTAGACCGTTGAAGATAAATTTTGCTCTCGAGAAGGCCCGTGGTGGACCTGTTGTAGTTCCTCAGTTTTCAGATAATGGACGCTTTAACAGGCACTGA 435 0.4115 MKGTTSLISLFSLSRHRILRSQYRFFNSSSSSSSPSLSSSSPSSNKLFVGGISWSVDEKSLKDAFSSFGYVTEVRIVYDKDSGRARGFGFVIFSNEDDAKSAKDAMDGKALLGRPLKINFALEKARGGPVVVPQFSDNGRFNRH 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre6g02532 144 SUPERFAMILY RNA-binding domain, RBD 18 129 IPR035979 GO:0003676
Trre6g02532 144 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Trre6g02532 144 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 31 126 - -
Trre6g02532 144 Gene3D - 15 127 IPR012677 -
Trre6g02532 144 SMART rrm1_1 46 119 IPR000504 GO:0003723
Trre6g02532 144 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 117 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre6g02532 Trre-Chr6 22256097 22256709 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre6g02532 10 124 C2H2 Transcription Factor Family AT2G19380 31.624 8.07e-13 62.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre6g02532 - - psat:127125499 193.741